Marinomonas posidonica: Mar181_3362
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Entry
Mar181_3362 CDS
T01508
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mpc
Marinomonas posidonica
Pathway
mpc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mpc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Mar181_3362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpc03021
]
Mar181_3362
03400 DNA repair and recombination proteins [BR:
mpc03400
]
Mar181_3362
Enzymes [BR:
mpc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Mar181_3362
Transcription machinery [BR:
mpc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Mar181_3362
DNA repair and recombination proteins [BR:
mpc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Mar181_3362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
DUF6285
FTO_CTD
Motif
Other DBs
NCBI-ProteinID:
AEF56380
UniProt:
F6CUG0
LinkDB
All DBs
Position
complement(3688308..3692510)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLGLLKSQGQSDEFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVALSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLIMDMTLRDIERVLYFESFIVIDPGMTTLDKGQLLNDEQYFEALEEFGDEFDARM
GAEAVQMLLRDLDMPEEINRMREELNSTNSETRIKKLSKRLKLVEAFYHSGNNPEWMVLD
VLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPS
LRLHQCGLPKKMALELFKPFIFSKLELRGMATTIKAAKKMVERETPEVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMAFSDIKEVHRAYGAK
QVDLHAKVKVRINQVDTTLEGEKVASTFIADTTVGRALLFDVVPDGLPFSVVNQPMKKKA
ISNLINECYRKVGLKESCIFADQLMYTGFAYATASGSSVGVDDFVIPPEKAEIIAKAEEE
VKEIEYQYADGLVTQGEKYNKVIDLWSRTNETVTEAMMDNLAKETTINKDGEEVEQQSFN
SVYMMADSGARGSVAQMRQLGGMRGLMAKPDGSIIETPITANFREGLSVLQYFTSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITEVDCGSTNGIVVNAMIEGGDVVVPLGQRVL
GRVVAQDVNDTKGNLVLSAGTLIDEHDVRDIEAAGVDEMLIRSVITCDTRHGVCAKCYGR
DLARGHQVNIGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQVKSAGTVRFH
KMKSIERDTGHLVVASRSSELAIADEAGREKERYKLPYGAVLSVREGDAVEAGQIVANWD
PHTHPIVSEMKGRLEFSGMEENVTIRRQSDEMTGLTTIEVMEVKDRPSAGKDLRPMISVV
DAEGNPVHIPGTDSPVQYMLPEKALLSLDHGSTVKSGEVLARIPQESQGNKDITGGLPRV
ADLFEARRPKDPAVMAEASGVVSFGKETKGKIRLVISPQDGGDPIETLIPKWRQINIFDG
EEVAKGEIIADGPLSPHDILRLQGVEALADYITNEVQEVYRLQGVVINDKHIEVIVRQML
RKVEVGESGDTDLIQGDQVELTQLLDANEKAEVESKFPAKFERVLLGITKASLATESFIS
AASFQETTRVLTEGAVTGKKDHLRGLKENVVVGRLIPAGTGLAYHSERKKKKDSAQMANE
GSPTVSASDVEEALSAALKD
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttattaggtcttctaaaatcacaaggacaatctgacgagtttgatgcgatc
cgcattggcttggcatcaccagatatgattcgttcatggtcttatggcgaagttaaaaag
cctgagaccattaactaccgtacgttcaaaccagaacgtgacggtttgttctgtgcaaaa
atctttggtcctattaaggactatgagtgcttgtgtggtaaatacaagcgtttgaaacac
cgtggtgttatttgtgagaagtgtggcgttgaagtggctctgtctaaagtgcgtcgtgaa
cgcatggggcatatcgagcttgcatcgccagtcgctcacatttggttcctgaaatctttg
ccatcccgtatcggtcttatcatggatatgaccttgcgtgatattgagcgagttttgtac
ttcgagtctttcatcgtgatcgatccaggtatgacgacgcttgataaaggtcaattgctt
aatgatgagcaatactttgaagcgctagaagagtttggtgatgagtttgatgcccgcatg
ggtgctgaagcggttcagatgctactacgcgatctggatatgccggaagaaatcaacaga
atgcgtgaagagctaaacagcacgaattctgaaactcgtatcaagaagctgtctaagcgt
ttgaaattggttgaagctttctatcattctggtaacaacccagagtggatggtgcttgat
gtattgccagttcttccgcctgatctgcgcccattggtgccgcttgagggtggtcgtttt
gcgacatctgacttgaacgatttgtaccgtcgagtaatcaaccgtaacaaccgtttgaag
cgtctattagagctatcggctccagacatcatcgtacgtaacgaaaagcgtatgttgcaa
gagtctgttgatgccttgcttgataatggtcgtcgcggtcgtgctatcactggttctaac
aaacgcccactgaaatctttggcagacatgatcaaaggtaagcaaggtcgtttccgtcag
aacctacttggtaagcgtgtagactattctggtcgttctgtcatcacagtaggtccatct
ttgcgtctacatcagtgtggtcttcctaagaagatggcgctggaactgtttaaaccattt
atcttctctaagcttgagttgcgcggcatggcgacaaccatcaaagcggcgaagaaaatg
gtagaacgtgaaacacctgaggtgtgggatattcttgatgaagttatccgcgaacaccca
gtaatgctaaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaacctatg
ttgattgaaggtaaagcaatccaattgcatccgttagtttgtgcagcgtacaacgctgac
tttgacggtgaccaaatggcggttcacgttcctttgacgatcgaagctcagcttgaagcg
cgtgctttgatgatgtcgacgaataacatcctatcacctgcaaacggtgagcctattatc
gtaccttctcaggacgtggtattaggcttgtactacatgacacgtgagaaaatcaatgcc
aaaggtgaaggcatggcgttttctgacatcaaagaagtacaccgtgcatacggcgcgaaa
caagttgatttgcatgccaaagtaaaagtacgtattaaccaagttgatacgacgctagaa
ggcgagaaagtcgcttctactttcattgcagataccactgttggtcgtgctttattgttt
gatgtcgtgccagatggcctaccattctcagtggttaaccaaccaatgaagaaaaaggcg
atctctaacctaatcaacgagtgttaccgtaaagttggcttgaaagagagctgtatcttt
gctgaccagttgatgtacacaggtttcgcgtacgcaacagcatccggttcatcggttggt
gtagatgacttcgttattccgccagaaaaagcagaaatcattgctaaagcggaagaagaa
gtaaaagaaatcgaatatcagtatgctgatggtttggtgacgcagggcgagaaatacaac
aaggtaattgacttgtggtctcgtaccaatgaaaccgttactgaagctatgatggataac
ttggcaaaagagacaaccattaataaagacggtgaagaggttgagcaacaatcttttaac
tctgtctacatgatggccgactccggcgcccgtggtagtgtggctcagatgcgtcagcta
ggtggtatgcgtggtctgatggcgaaaccagatggttccatcatcgaaacaccaatcaca
gcgaacttccgtgaaggtctatcagtacttcagtactttacctctactcacggtgctcgt
aagggtctagctgatacggcattgaaaaccgcgaactctggttacctgactcgtcgtctt
gttgatgttgcgcaggatttggtaatcactgaagtagattgtgggtcaaccaatggtatc
gtcgtgaatgcgatgatcgaaggtggtgatgttgttgttcctctaggccagcgtgttctt
ggtcgtgtggttgcgcaagatgttaatgacaccaaaggcaatctagtgctttcggctggt
actttgattgatgagcacgatgtgcgtgatatcgaagcagcaggcgttgacgagatgttg
atccgttctgttattacttgtgatacgcgtcatggtgtgtgtgccaagtgttacggtcgt
gacttggcgcgtggtcatcaagttaacattggtgaagcaatcggtgttgtggcagcgcaa
tcaatcggtgagcctggtacacagttgaccatgcgtaccttccacatcggtggtgcggcg
tctcgagcatctgctgtcgatagtgtgcaggtgaagagcgcaggtactgttcgtttccat
aaaatgaagagtattgaacgtgatacgggtcatttggttgtggcgtctcgttcctctgaa
ttggcaattgctgatgaagctggtcgtgagaaagagcgttacaagctaccttatggtgcg
gtattgagtgttcgtgaaggtgatgctgttgaagctggccagatcgttgctaactgggat
ccacacactcacccaatcgtttctgagatgaaaggtcgtctggaattcagcggaatggaa
gagaatgtcaccattcgtcgccaatctgatgaaatgaccggtttgactaccattgaggtc
atggaagtgaaagaccgtccttcggcgggtaaagatcttcgtccaatgatttctgtggtc
gatgcagaaggtaatccagtgcatattcctggtaccgactcgccagtacagtacatgttg
cctgagaaagctttgttgagcttggatcatggttcaacggttaagtctggtgaagtattg
gctcgtattcctcaggaatcgcaaggtaacaaggatatcaccggtggtcttccacgagtg
gcagacttgtttgaagcgcgtcgtcctaaagatccagctgttatggcagaagccagcggt
gtggtgagtttcggtaaagaaacaaaaggtaagattcgcttggtaatctcgccacaagat
ggcggtgatccaattgagacgctgattccaaaatggcgtcaaatcaacatcttcgatggt
gaggaagtggcaaaaggtgagattatcgccgacggtcctttgagcccacacgatattttg
cgccttcaaggtgtagaagctttggctgactacattactaatgaagtgcaagaagtctat
cgtttgcaaggtgttgtgattaacgataaacacattgaagttatcgttcgtcaaatgcta
cgtaaggtagaagtgggtgagtctggtgatacagatcttatccaaggtgatcaggttgag
ttaactcaacttctagatgcaaacgaaaaagccgaagtagagagtaaattccctgctaag
tttgagcgtgtgttgctaggtattaccaaagcttctttggcaacagagtccttcatctct
gcggcatcattccaagagacaactcgtgtcttaacggaaggtgcggtaacaggtaagaaa
gaccatcttcgtggcttgaaagaaaacgttgttgtaggtcgtctgatcccagcgggtaca
ggtttggcttaccacagtgagcgtaagaagaagaaagattctgcgcaaatggcaaatgaa
ggaagtcctacagtaagtgcatctgatgtggaagaagcattaagtgcagcactgaaagac
taa
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