Methanocella paludicola: MCP_0962
Help
Entry
MCP_0962 CDS
T01142
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mpd
Methanocella paludicola
Pathway
mpd03420
Nucleotide excision repair
mpd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MCP_0962
03430 Mismatch repair
MCP_0962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpd03400
]
MCP_0962
Enzymes [BR:
mpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MCP_0962
DNA repair and recombination proteins [BR:
mpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MCP_0962
MMR (mismatch excision repair)
Other MMR factors
MCP_0962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
AAA_30
UvrD_C_2
ResIII
DEAD
PhoH
AAA_22
AAA_11
T2SSE
Motif
Other DBs
NCBI-ProteinID:
BAI61034
UniProt:
D1YX62
LinkDB
All DBs
Position
963433..966696
Genome browser
AA seq
1087 aa
AA seq
DB search
MDFFEWFAERTSDGANKRYLNDEQKRAIEAAKGAILVVAGAGTGKTTMITAKAAYLIKEK
KLKPERLIMLTFSREAAKHMKDEIVRILPEARDVYANTFHSFCYEFLRDHSAKTGITDDY
QVLDEANAKFLMYKELDVPAYWVSIYVNTIQRAKDLDISQEAYEGYISRLKAQLDEYAPG
ASDLADEVSKATVRINTMHLEPPTKALREEKNFLTAFIEAYEEHEKYTAFLEAWKGYEKL
KSEKKMLDYADMIKMVIDYCQAWGDDALAELYDYVIVDEFQDTNRQQFKLLKILASKCGD
ITAVGDENQAIYAFRGAYPENIGEFTIDFKADVKNLTENYRSTNAILRTAHRLIVNNYDD
PEETKLLKSALGVEGDKVKLIRTSNPKEQARRVIEEIERIVEDDIDFNRIAVLFRSHSSA
NAVQSAFESRSIPFQLISNNGFLKRPEVRTALAYLYVIANLEDPRYGADQMWWKLLHYKY
GLTMKDSHILAKAAKRDTIQNVLLGKLPDALSWDGKKKINSLLAKIEELRKNKNKSLSNL
LLDVYEASGLSRELSHESTRTSRIWMLNLRYLHDLVAGFEDFYGADLAGFIEYMRMLDEL
GEDLDAPTLKEAQGVVLMTCHGAKGLEYDYVFIVDLAKDKFPITAGGRAPLLPDELNDRF
RDIFEAEWESDKELDEALKARKRELRLKEERRLAYVAYTRAKKELYLCHPQSYGENERSP
SMFIAESCFEDNSVHDDIELIQDDEVKVGEMAKDGALDKKKDEIKRLVLSTIDSEPQLAL
YNLLLYQGLCCHNLPSGIPEAARAREDAALIMKDIGDGTPLGLKFDPEEVVLSHSSLKIY
RDCPKKFELARLLRMPSRYDDEEEGEGALGFGTFVHEALELAAKNKVKSRQELDDIAAEL
LKEPGYKDIDVKRAKVIFDTFWARNRTKLGNVVMTEQAFSFELGGFRFSGKIDRVDELNG
NGEVEIIDYKTGREPSKEDRESQLLLYKLAFEYDPALKAMGYKPMNLTLELLEAEKPRIF
QVDDDGFMVCTNGRCVKANVAEVEAGLLELAECIKHDYENGFGVKEDCGGTMGGGSSCEY
RMYCPRW
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atggattttttcgagtggttcgccgagcgcacgagcgatggtgccaataaaaggtacttg
aacgatgagcagaaacgtgccatagaagctgcaaagggcgctatcctagtcgtcgccggc
gccggcaccggtaagaccacgatgatcacggcgaaggccgcttatctcattaaagagaaa
aagttgaagcctgaacggcttattatgctcaccttctcccgggaagcggctaagcacatg
aaagatgaaatcgtaaggatattacccgaagctcgagacgtatatgccaacacttttcac
tccttttgctatgagtttctccgggaccattcggcgaagaccggcattacggacgattat
caggtactggatgaggcgaatgctaagttcctgatgtataaagagcttgatgtcccggct
tattgggtctcgatctatgttaatactattcagagggcaaaggacctggatatttctcaa
gaagcttatgaagggtacatttcccggcttaaggctcagcttgacgagtatgcgcccggc
gcttctgatctggctgacgaagtatccaaggccacagtgaggatcaatacgatgcacctg
gagcctccgacgaaggcgctccgggaggagaaaaatttcctgacggcgttcattgaggcg
tacgaggagcatgagaaatatacagcgtttttagaggcctggaaaggctatgagaagctg
aagtcagaaaagaaaatgctcgactacgcggacatgatcaagatggtcatcgactactgc
caggcctggggtgacgatgccctggcggaactttatgattatgtcatcgtggacgagttc
caggatactaatcggcagcagttcaagctgttaaagatactggcctcgaagtgcggcgac
ataaccgctgtgggtgacgagaaccaggctatttatgcgttcaggggcgcatatccggag
aatatcggcgaattcacaatcgattttaaggctgacgtaaagaaccttactgagaattac
cgctcgactaatgcgatcttaaggactgctcacaggcttattgtcaataattacgatgac
ccggaggagactaagctgttgaagtccgctcttggtgttgaaggcgacaaggtgaagctg
ataaggacgtcaaaccctaaagagcaggcaagaagggtaatcgaagagattgagcgcatc
gttgaagatgatatcgattttaaccgtatcgccgtattattccgttcacattcctccgcg
aatgcagtccaatcagcatttgaaagccgtagcatcccgtttcagcttattagtaataac
ggatttttaaaacggcccgaggtaaggacggctctcgcttacctgtatgtcatcgctaac
ctggaagatccgcgttatggggcagaccagatgtggtggaagctcctgcattacaaatac
ggtctgacgatgaaggactcgcacatactggcaaaagcggcaaagcgtgataccatccag
aacgtgcttctggggaagctgccggatgcactatcgtgggatgggaagaaaaagatcaac
tcgctgctggctaagatagaggagttgaggaagaacaagaataagtcgttgtcgaattta
ttgctggatgtttacgaggcatccggattgtcccgggagctctcacatgagtcgacccgg
actagccgcatatggatgttgaacctgagatacctgcacgacctggttgccgggttcgag
gacttttacggcgctgacttagccgggttcatcgagtacatgcgcatgcttgatgagctg
ggtgaagatcttgatgcgcccactttaaaggaagctcaaggggtcgtgctcatgacctgc
catggcgcaaaaggcttagaatacgactacgtgttcatcgtcgacctggctaaggataaa
ttccctatcacggctggcggccgggcgccgctattgcctgacgagctcaacgaccgcttc
agggatatctttgaggccgaatgggagagcgataaagagctggacgaggcgttgaaggcc
cggaagcgagagctgcggctgaaggaagagcggcggctggcatacgtggcctatactcgg
gcgaagaaggagctttatctctgtcatccgcagtcgtatggcgagaacgagcgcagcccg
tcgatgttcatcgctgagtcgtgctttgaggataatagcgtccacgacgatatcgagctc
atccaggacgatgaggtaaaagtcggagagatggcgaaggatggcgccctggataagaaa
aaggacgagatcaagaggctggtgctttcgacgatcgattcggagcctcagctggcgctt
tataatttattgttgtaccagggtctgtgttgtcataatctgccctctggcattcctgaa
gcggcgagggcgagagaagatgcagccctgatcatgaaagacatcggcgatgggacgcct
ctcgggttgaagttcgaccccgaggaggtcgttttatcccattcatcgctgaagatttac
cgtgactgtcccaaaaagtttgagcttgcgcggctgctgaggatgccatcgaggtacgat
gacgaggaggagggcgagggagccctgggattcggcacgttcgttcatgaagccctggaa
cttgcggcgaagaataaggtgaagtcgaggcaggagctcgatgatattgccgctgagctg
ctaaaagagcccggttataaggatattgatgtaaagcgggctaaggtcatcttcgatacg
ttctgggcgcgcaacaggactaagctcggtaatgtggtcatgacagagcaggcgttcagt
ttcgagctcggcgggttcaggttctccgggaagatcgaccgtgtggacgagctgaatggt
aatggtgaggtagagatcatcgattataagactggccgggagccgtctaaagaggaccgg
gagagccagttgttgctttataagctggcttttgagtatgaccctgctttgaaggcgatg
ggatataagccgatgaaccttacgctggagttgttagaggcggagaagccgaggatattc
caggtcgacgatgatggattcatggtgtgcactaatgggcggtgcgttaaggcgaatgtc
gctgaagttgaggccggtttactggaactcgctgagtgtattaagcatgattacgagaac
ggtttcggggtgaaggaggattgcggcggtactatgggtggggggagtagttgtgagtac
aggatgtactgccctaggtggtga
DBGET
integrated database retrieval system
