Methanocella paludicola: MCP_1505
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Entry
MCP_1505 CDS
T01142
Name
(GenBank) putative 3'-5' exoribonuclease
KO
K07573
exosome complex component CSL4
Organism
mpd
Methanocella paludicola
Pathway
mpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCP_1505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpd03019
]
MCP_1505
Messenger RNA biogenesis [BR:
mpd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MCP_1505
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MCP_1505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
S1
OB_RRP5_4th
ECR1_N_2
Zn_Tnp_IS91
RRP4_S1
Zn-ribbon_GIR1
HypA
Cas12f1-like_TNB
zf-AtTam37
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BAI61577
UniProt:
D1YYQ5
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All DBs
Position
1506004..1506570
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AA seq
188 aa
AA seq
DB search
MPEIGDFVIPGDMIGTSEEFLPGKGTYEDRGNIYAIMTGRLTYDKKERSVSVDPVTNIPP
TPKEGDIVIGRVTDIKGSVALVELSRIKGHLDREIAGNTQAAIHISNVKDSYVQDLAREF
GYQDIVKAKVIDTRNMRLSTVDKNLGVLTSQCPRCKVNLVFENGKLKCPKCEKRESRKLS
SDYGKGII
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaattggagattttgtaatacccggcgacatgataggcacatcagaggagttc
ctgccgggaaagggcacttacgaggatagaggcaacatctatgccatcatgacaggccgc
ctgacctatgataaaaaggagagaagcgtatccgtggacccggtcaccaacattccgccc
accccgaaagagggcgatattgtcatcggccgcgtgacggacatcaagggttccgtggcg
ctggtggagctgtcccgaatcaagggccacctcgaccgcgaaatagcagggaacacccag
gcagcgatacacatctcgaacgtgaaagactcgtacgtgcaggacctggccagggagttc
ggctaccaggacatcgtcaaggcgaaggtcatcgacacccggaacatgcgcctgtccacc
gtggacaagaacctgggcgtgctgacatcgcagtgcccccgctgtaaggtgaacctcgtc
ttcgagaacggtaagcttaaatgcccgaagtgcgagaagagggagtccaggaaattatcc
tcggactatggcaagggcatcatttaa
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