KEGG   Methanocella paludicola: MCP_1505
Entry
MCP_1505          CDS       T01142                                 
Name
(GenBank) putative 3'-5' exoribonuclease
  KO
K07573  exosome complex component CSL4
Organism
mpd  Methanocella paludicola
Pathway
mpd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mpd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MCP_1505
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mpd03019]
    MCP_1505
Messenger RNA biogenesis [BR:mpd03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MCP_1505
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     MCP_1505
SSDB
Motif
Pfam: ECR1_N EXOSC1 S1 OB_RRP5_4th ECR1_N_2 Zn_Tnp_IS91 RRP4_S1 Zn-ribbon_GIR1 HypA Cas12f1-like_TNB zf-AtTam37 Auto_anti-p27
Other DBs
NCBI-ProteinID: BAI61577
UniProt: D1YYQ5
LinkDB
Position
1506004..1506570
AA seq 188 aa
MPEIGDFVIPGDMIGTSEEFLPGKGTYEDRGNIYAIMTGRLTYDKKERSVSVDPVTNIPP
TPKEGDIVIGRVTDIKGSVALVELSRIKGHLDREIAGNTQAAIHISNVKDSYVQDLAREF
GYQDIVKAKVIDTRNMRLSTVDKNLGVLTSQCPRCKVNLVFENGKLKCPKCEKRESRKLS
SDYGKGII
NT seq 567 nt   +upstreamnt  +downstreamnt
atgccagaaattggagattttgtaatacccggcgacatgataggcacatcagaggagttc
ctgccgggaaagggcacttacgaggatagaggcaacatctatgccatcatgacaggccgc
ctgacctatgataaaaaggagagaagcgtatccgtggacccggtcaccaacattccgccc
accccgaaagagggcgatattgtcatcggccgcgtgacggacatcaagggttccgtggcg
ctggtggagctgtcccgaatcaagggccacctcgaccgcgaaatagcagggaacacccag
gcagcgatacacatctcgaacgtgaaagactcgtacgtgcaggacctggccagggagttc
ggctaccaggacatcgtcaaggcgaaggtcatcgacacccggaacatgcgcctgtccacc
gtggacaagaacctgggcgtgctgacatcgcagtgcccccgctgtaaggtgaacctcgtc
ttcgagaacggtaagcttaaatgcccgaagtgcgagaagagggagtccaggaaattatcc
tcggactatggcaagggcatcatttaa

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