Methanocella paludicola: MCP_2059
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Entry
MCP_2059 CDS
T01142
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mpd
Methanocella paludicola
Pathway
mpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCP_2059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpd03019
]
MCP_2059
03009 Ribosome biogenesis [BR:
mpd03009
]
MCP_2059
Enzymes [BR:
mpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MCP_2059
Messenger RNA biogenesis [BR:
mpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MCP_2059
Ribosome biogenesis [BR:
mpd03009
]
Prokaryotic type
rRNA helicases
MCP_2059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAI62131
UniProt:
D1Z0A9
LinkDB
All DBs
Position
2060574..2061989
Genome browser
AA seq
471 aa
AA seq
DB search
MTTFQELSLSNATLKALAGMGFEEATPIQEQAIPAALAGKDVIGQAQTGTGKTAAFGIPM
IENIDAGSGDIQGIVITPTRELAVQVAEELNRIGEFRGIHTLPIYGGQDIKRQINGLKRR
PQIIVGTPGRLVDHMMRRKTISLKNIRTVVLDEADEMLDMGFIEDIEEILKRTPEGRQTL
LFSATIPAPIRKLAERFMKDPQTIGIKSKSMTVSGTEQAYYEVPEKHKFEVLCRLLDVQL
PALAIVFVRTKRRVDELTKALGERGYPAEGIHGDLAQSKRDSVMRGFKEGTTEVLVATDV
AARGLDISGVTHVYNLDIPQDPDSYVHRIGRTGRAGKKGTAITFVTPREMGLLRFIEKIT
RHSIERRPIPSAAEAFEGKQQALVESLLSVAGGSDISKYRGVAQDLLDMNDSVTLLSAAL
KMLSKERDNVPETVELTEDRPMRPRNERRRESTGRRDSGQRDYEFRKRRSR
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgtttcaagaattatcattaagtaatgcgacactaaaggcactggcgggcatg
gggttcgaagaggccacgcccatacaggaacaggccataccggcggcactggcgggcaag
gacgtcatcggccaggcacagaccgggaccgggaagaccgccgctttcggcatacccatg
atcgagaacatcgacgccggctcgggcgacatccagggcatcgtgatcacgccgaccagg
gagctggccgtgcaggtggccgaggagctcaaccgcatcggcgagttccggggcattcac
acgctgcccatctatggcggccaggacatcaagaggcagatcaacggtttaaaaagaagg
cctcagatcatcgtcggcacgccgggaaggctggtcgaccacatgatgcgccgcaagacc
atctcgctcaagaacatccggacggtcgttctggatgaagcggacgagatgctggacatg
ggcttcatcgaggacatcgaggaaattttgaaaaggaccccggaaggccggcagacgctg
ctcttttcggccaccataccggcccccatccgtaagctggccgagcggttcatgaaggac
ccgcagaccatcggcatcaagtcgaagtcgatgacggtctccggcacggagcaggcttat
tatgaggtgcccgagaagcacaagttcgaggtgctatgccgccttcttgacgtgcagctt
ccggccctcgccatcgtcttcgtgcgcacgaagcggcgcgttgatgagcttacaaaggcg
cttggggagcgcggctaccccgcagagggcatacacggggacctggcgcaatctaagcgg
gacagcgtcatgcggggcttcaaggaaggcacgaccgaggtgcttgtggccacggatgtc
gccgcgagaggcctggatatcagcggcgtgacccacgtctataacttagatatcccgcag
gacccggacagctacgtccaccgtatcggccgcaccggccgggcgggcaagaagggcacg
gccatcacgttcgttaccccgcgtgagatggggcttttacggttcatcgaaaagatcacc
cgccactcgatcgaacggaggcccattccgtctgcggccgaggcctttgagggcaagcag
caggctttagtggagagcctgctcagcgtggccggcgggagcgacatatcgaagtacagg
ggcgttgcccaggacctgctggacatgaacgattccgttacgctgctttcggcggccctg
aagatgctgagcaaggaacgtgacaatgttccggagaccgtggagctgactgaggatagg
cccatgcgaccgcggaatgagcgcaggcgtgaaagtaccggccgccgggattccggccag
cgggactacgagttccgtaagcggcgctctcgataa
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