Methanocella paludicola: MCP_2258
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Entry
MCP_2258 CDS
T01142
Symbol
rpoD
Name
(GenBank) DNA-directed RNA polymerase subunit D
KO
K03047
DNA-directed RNA polymerase subunit D [EC:
2.7.7.6
]
Organism
mpd
Methanocella paludicola
Pathway
mpd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mpd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MCP_2258 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpd03021
]
MCP_2258 (rpoD)
Enzymes [BR:
mpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MCP_2258 (rpoD)
Transcription machinery [BR:
mpd03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
MCP_2258 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Fer4_10
Fer4_9
Fer4_7
Fer4
Fer4_16
Fer4_6
Fer4_8
Fer4_4
Fer4_18
Fer4_2
Fer4_21
Motif
Other DBs
NCBI-ProteinID:
BAI62330
UniProt:
D1Z0V8
LinkDB
All DBs
Position
2220953..2221741
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AA seq
262 aa
AA seq
DB search
MKLEILELGDRKAKFVLSEVTPAFANAVRRAMLADIPKMAIDYVDIYDNTSVMFDEMLAH
RMGLIPIKTNLDMYKLREECDCKGEGCALCQVSFTLSAEGPCMVHSRDMKSSDPDTVPAD
DNVPIIELKERQKVVLTAVARLGRGKEHSKFQPVCPPGYKYVPIIEISDKCDSCKQCVEQ
CPRGVFAVDKNKVVVDNPYNCSMCEECLEACDLKAIKLSIDNTAFIFMVETDGSYSAQEI
ITRAVESIRARSAALNEVLENF
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgaagctggagatcctggaactcggcgaccgtaaggcgaagttcgtcctgtcggaggtc
acccccgcgttcgcgaacgccgtcaggcgcgcgatgctcgccgacatccccaagatggcc
atcgactacgttgatatttacgacaacacgtccgtcatgttcgacgagatgctggcacac
cgcatgggcctcatcccgatcaagactaacctcgacatgtacaagctccgcgaggagtgc
gactgcaaaggcgagggctgtgccctctgccaggtgagcttcacgctgtccgcggaaggc
ccctgcatggtgcactcccgggacatgaagtcctcggacccggataccgttccggccgac
gataacgtccccatcatcgagctgaaggaaaggcagaaggtagtcctcacggccgtggcc
cggctcggcaggggcaaggagcactcgaagttccagcccgtttgcccgccaggctacaag
tacgtgccgatcatcgagatcagcgacaagtgcgactcgtgcaagcagtgcgtcgagcag
tgcccccggggcgtcttcgccgtcgacaagaacaaggtcgtcgtcgataacccgtacaac
tgctcaatgtgcgaggagtgcctggaggcatgtgaccttaaggccattaagttgtccatc
gacaacactgccttcatattcatggtcgagacggatggctcgtacagcgcccaggagatc
attacccgggccgtcgaatctatccgggcccggtcggccgcgctcaacgaagtccttgaa
aatttctaa
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