Methanocella paludicola: MCP_2626
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Entry
MCP_2626 CDS
T01142
Name
(GenBank) probable exosome complex exonuclease 2
KO
K12589
exosome complex component RRP42
Organism
mpd
Methanocella paludicola
Pathway
mpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCP_2626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpd03019
]
MCP_2626
Messenger RNA biogenesis [BR:
mpd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MCP_2626
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MCP_2626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
BAI62698
UniProt:
D1Z1X6
LinkDB
All DBs
Position
complement(2576810..2577589)
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AA seq
259 aa
AA seq
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MSEDVIAEIKKDYIYSLASQGDRADGRKFDEFRPVTIKVGVIGKAEGSSDVMIGDSRVVV
GVKIQPGEPFMDTPDKGVIITNLELVPLASPTFETGPPREDAIELARVVDRGVRESEAID
LSKLCIESGQKVWMVFIDVHVLDHDGNLMDAASMGAIAALMSAKIPNAKFGLGEDAKLPL
EDVPVGVTAVKIGSSIILDPSLDEENVASCKLTVITNKEGALAGMQKSGVGTLTPDEVKY
IVHIAKEKANVLRQKLEEI
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggacgtcatcgcagagatcaagaaggattacatttatagcctggcaagccag
ggcgaccgggccgacggccgaaagttcgacgagttccggccggtgaccattaaggtcggc
gtcataggcaaggctgaaggctcgtccgacgtgatgatcggggactcccgggttgtcgtc
ggcgtgaagatccagcccggagagccgttcatggacacgcccgacaagggcgtcatcatc
acgaacctcgagctcgtgccccttgcttcgccaacgttcgagacggggcccccgagggaa
gatgccatcgagctggcccgcgtcgtagaccgcggcgtcagggaatccgaagcgatagat
ttatctaagttgtgcattgaaagtggtcagaaagtctggatggtcttcatcgacgtccac
gtcctggaccacgacggcaacctgatggacgcagcctcgatgggcgcgatcgcagccctg
atgagcgcgaagatcccgaacgcaaagttcggcctcggcgaagacgcgaaactcccgctc
gaggacgtccccgttggcgtcactgccgtaaagatcggcagctctatcatcctggacccg
agcctggacgaggagaacgtggcgtcgtgcaagctgaccgttatcactaacaaagagggc
gcgctggccgggatgcagaagagcggcgtaggcacgcttactcccgacgaagtaaaatat
atcgtgcatatcgcaaaagagaaggcgaacgtgctcagacaaaaactggaggaaatctaa
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