Methanocella paludicola: MCP_2628
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Entry
MCP_2628 CDS
T01142
Name
(GenBank) putative exosome complex RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
mpd
Methanocella paludicola
Pathway
mpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCP_2628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpd03019
]
MCP_2628
Messenger RNA biogenesis [BR:
mpd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MCP_2628
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MCP_2628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
RRP4_S1
ECR1_N
RRP40_S1
KH_1
S1
KH_2
Thioredoxin_9
Motif
Other DBs
NCBI-ProteinID:
BAI62700
UniProt:
D1Z1X8
LinkDB
All DBs
Position
complement(2578343..2579023)
Genome browser
AA seq
226 aa
AA seq
DB search
MDMEREIVVPGDMLGEDPKLAGIGTYVQDGRVYSANYGLVDRRTNIKVIPLSGRYIPARG
DLVIGKIVDMTFSNWFADINSPYEGMLHISEFPERVDPANMGKYLHIGELIIARVEDVDP
TMKVELTMRDEHLRILKQGRVIDISHVKIPRVIGRNGSMISMLKKDLNVSIFVGQNGRIW
MKGDDKYVDLAIRTVFKIEREAHTSGLTDKIKEYISTELEQLRNTT
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atggatatggagagggaaatcgttgtcccgggcgacatgctcggggaggatccgaagctt
gccgggatcgggacctacgtgcaggacggaagagtatattccgccaactacggcctcgtg
gacaggcggacgaacatcaaggtcataccgctttccggacggtacatacccgcccggggc
gacctcgtcataggcaagatcgtcgacatgacgttctcgaactggttcgcggacatcaac
tcgccctacgaggggatgcttcacatctccgagttcccggagcgcgtggaccccgcgaac
atgggcaagtaccttcacatcggcgaattgatcatcgcccgcgtggaggatgtcgaccct
acaatgaaggtcgagcttacgatgagagacgagcacttacgcatactgaagcagggaagg
gtcatcgacatatcgcacgtcaagatcccccgcgtcatcgggcgtaacggctccatgatc
agcatgctcaagaaggacctgaacgtgagtatcttcgtcggacagaacggaagaatttgg
atgaaaggcgacgacaagtacgtagacctggccatacgcacggtcttcaagatcgagcgc
gaggcgcacacgtcagggcttactgataagatcaaagagtacatcagcacagagctggaa
cagttgaggaatacgacatga
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