Mannheimia pernigra 17CN0883: HV560_03575
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Entry
HV560_03575 CDS
T07233
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
mpeg
Mannheimia pernigra 17CN0883
Brite
KEGG Orthology (KO) [BR:
mpeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mpeg03009
]
HV560_03575 (srmB)
Enzymes [BR:
mpeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HV560_03575 (srmB)
Ribosome biogenesis [BR:
mpeg03009
]
Prokaryotic type
rRNA helicases
HV560_03575 (srmB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QLB41968
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Position
725165..726487
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AA seq
440 aa
AA seq
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MTELITFKEFDLSPQLLKALAKKGYSRPTAIQQATIPIALEGRDLLGSAPTGTGKTAAFL
LPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAKEFAQFTKLSIATITGGVAYQNH
GEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEADRMLQMGFGQDAEKIAAETR
WRKHTWLFSATLEGESLEDFSTRLLNDPVKVDAEPSRRERKKIQQWYYHSDNVEHKTKLL
ARLLGDFSIEKAIVFVRRREDVRELSETLRKRGLRSTYLEGEMAQTKRNQAISRLKEGVV
NVLVSTDVAARGIDIDDVDFVINYDLPYSADTYLHRIGRTARAGKKGSAVSLVEAHDYKL
LGKIKRYTEEALKPRVIDGLEPRTKAPKDGELNVISKKEKARIKKKKEVKKEAVMQKVKV
RHKDTKNIGKRRKPSSKEVS
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaattaataacttttaaagagtttgatttaagccctcaactactcaaggcctta
gcaaaaaaaggttacagtcgtccaacagctattcaacaagcgacgattccaattgcactt
gaagggcgtgatttgctaggctctgcccccacaggaacgggaaaaacagccgcattttta
ttacccgccattcagcatttattagattatccacgccgtaagccgggtgcccctcgtatt
ttaatcctaacaccaacccgagaattagcaatgcaggtggcagaacaagcaaaagaattt
gctcaatttactaaattaagcattgcaactattacggggggcgtggcgtatcaaaatcac
ggagaagtatttaacagcaatcaagatattgtagtggcaacacctgggcgtttaatgcaa
tacattaaggaagagaattttgactgccgtgcggtggaagtgcttatttttgacgaagcc
gatcgaatgttgcaaatgggttttggacaagatgcggagaaaatcgcagctgaaactcgc
tggcgtaaacatacttggctattttcagcaacccttgaaggggaatcgctggaagatttt
tctacgcggttattaaacgatcctgttaaagttgatgccgaaccaagccgccgtgagcgt
aaaaaaattcagcaatggtattatcattcggataatgtggaacataaaactaaattattg
gctcgattgcttggggatttttcaattgaaaaagcgattgtgtttgttcgccgtcgtgaa
gatgtgcgagagctgagcgaaacgctgcgtaaacgaggtctgcgttctacctatcttgaa
ggcgagatggcacaaactaagcgtaatcaggcgatttctcgcttaaaagagggggttgtg
aatgtgttggtctcaaccgatgtagcagcacgcggtattgatattgatgatgtggatttt
gtcatcaattatgatttgccttacagtgctgatacttacctccaccgtatcgggcgtact
gcacgtgcaggcaaaaaaggctctgcggtttcgttagtagaggctcacgattacaagctg
ctcggtaaaattaaacgctacacagaagaagcattaaaacctcgtgttatcgacggttta
gaacctcgtactaaagccccgaaggatggcgagctaaatgtgattagcaaaaaagaaaaa
gcacgtatcaaaaagaaaaaagaagtgaaaaaagaagcggtgatgcaaaaagtcaaagtt
cgtcataaagatacaaagaacattggtaaacgccgtaagcctagtagtaaagaagtttct
taa
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