Mannheimia pernigra 17CN0883: HV560_04305
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Entry
HV560_04305 CDS
T07233
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mpeg
Mannheimia pernigra 17CN0883
Pathway
mpeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HV560_04305 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpeg03019
]
HV560_04305 (rne)
03009 Ribosome biogenesis [BR:
mpeg03009
]
HV560_04305 (rne)
Enzymes [BR:
mpeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HV560_04305 (rne)
Messenger RNA biogenesis [BR:
mpeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HV560_04305 (rne)
Ribosome biogenesis [BR:
mpeg03009
]
Prokaryotic type
rRNA processing factors
HV560_04305 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
GAPT
Motif
Other DBs
NCBI-ProteinID:
QLB42095
LinkDB
All DBs
Position
complement(873584..876517)
Genome browser
AA seq
977 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFPSGYVFNGRPNIKDIIQEGQEVIIQVSKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEEL
QWDLKVLLHHWDAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKA
KNHIRLVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPIRHQREVEN
RIREATRQDRARIQFARISRFGLLEMSRQRLSPSLSEASSHICPRCRGTGKVRDNESIAL
SILRLLEEEAIKENTAQVHTIVPVQIATYLLNEKRKTISSIEKRHDVQIMVVPSESMETP
HFAVYRLRENEVTPTLSYDLTKHYEDHSEEEHCHHHHQQDDVLVTRNEPVITVESVLQST
ELNLQSAPTPAKPTKPSLLSRLMTKIKAWFKEEEEEKKPKAKTRNHRDRRQRRERPSRQT
KAENQERKQQTQTVVQEEKPARTEKKQRRAVVEEITAVTETQTSRTNHQQNQTERRQRRE
LRKKVRVETADASSENVALSKTDTSTVKVNDVEQVQKNMEIQPLVATTETVTETRDNNRQ
RRLPRHLRVGNQRRRENQPSNLAPSIPLVAAVASPELASGKVWIQFATPVKTEEKAQFLS
VDQMLEQQEKKSILEEKQKVTEKKAHSVSPLGGFVTQPTHRDLVKEKQAEQANPPAEKTS
ELDVQKAEVKEHIAPFGNVVTQLSERDLVKEKNERVGKFQSKATIAPAIEADPQQAIEIP
VSNYEGSYSFNGRLGTFSRAEHTKAEMTVTTLPTENLDTFAITEWQNSKYYFYGKGFGGY
SGAVSQVQSAPRSTGVE
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcaactcaaaaagaggagttgcgtgttgcccttgttgat
gggcaacgtttatttgacttggatattgaaagtccaggccacgaacagaaaaaatcaaat
atctacaaaggtaaaattacccgtgttgaaccaagccttgaagcagcattcgtagattat
ggtgcagaacgccacggcttcctacctttaaaagaaatttcccgtgaatacttcccatca
ggctatgtgtttaatggtcgtccaaatatcaaagatattatccaagaagggcaggaagtt
atcattcaagtcagcaaagaagagcgtggtaataaaggtgcagccctaactacttttatc
tcacttgctggcagctacttagtgttaatgccaaacaatcctcgtgcgggtggtatttct
cgtcgtattgaaggcgatgagcgtttagaattaaaagaggctttagactgcctagatgtg
cctgaagatgttggcttaatcgtacgtaccgctggtgtaggcaaatcgccagaagagtta
caatgggacttaaaagtgctattgcatcactgggatgcaattaaaaaagcagcagaatct
cgccctgctccgttcttaatccatcaagaaagtgatgtgattgtacgtgccattcgtgat
tacctacgccgtgatattggcgaaatactcatcgataacaaaaaagtgtttgaaaaagca
aaaaaccacatccgcttggttcgcccagatttcatcaacagagttcgtttgtatgaaggc
gaagtaccgcttttcagtcactatcaaatcgaatcacaaatcgaatcagctttccaacgt
gaggtccgtttaccgtctggcggttcaattgtgattgatgtcactgaggcactgacagcc
attgacattaactcttcacgttcaacccgtggtggcgatattgaagaaacagcacttaat
accaatttagaagcggcagatgaaattgctcgtcaattacgtttgcgagacttaggcggg
ttaattgtcattgatttcattgatatgacacctattcgccaccagcgtgaagtagaaaac
cgcattcgtgaagcgactcgccaagaccgtgcaagaatccaatttgctcgcatttctcgt
ttcggcttacttgaaatgagccgtcagcgtttaagcccttcgttaagtgaggcatcatcg
catatctgccctcgctgccggggaacaggtaaagtccgtgataatgaatctatcgcgctt
tctatcttacgtttattggaagaggaggcaattaaagaaaacacggctcaagttcataca
attgtgccagtacaaattgcaacgtatttgttaaatgaaaaacgtaaaacgatttcaagc
attgaaaaacgccacgatgttcaaattatggttgtgccatctgaaagtatggaaaccccg
cactttgcagtgtatcgtctgcgtgaaaatgaagtaacgccaactctaagttatgattta
actaaacattacgaagatcattctgaagaagaacactgtcatcaccatcaccaacaagat
gatgttttagtgactcgtaatgagcccgttattaccgttgaatctgtattacaaagcacg
gaattaaatctccaatcagctccaacgccagcaaaaccgactaagccatcgttactaagc
cgtttaatgacaaaaattaaagcctggttcaaagaggaagaagaagagaaaaaaccaaaa
gcgaaaacacgcaaccatcgtgatcgtcgccaacgccgtgaacgccctagccgtcagact
aaggctgaaaatcaagagcgtaaacaacagactcaaacagttgtacaagaagaaaaacca
gctcgtactgagaaaaaacaacgccgtgcagtggtagaagaaatcacagctgtaactgaa
actcaaacaagccgtacgaatcatcagcaaaatcaaactgagcgtcgccaacgccgtgag
ttacgcaaaaaagtccgagtagaaacggcagatgcctcaagtgaaaatgtagcactttca
aaaacagacacttccaccgttaaagtgaatgatgttgaacaagtgcaaaaaaatatggaa
attcaaccgcttgtagcaacaacagaaacagtcacagaaactcgtgataacaaccgccag
cgtcgtttacctcgccacttacgtgtaggtaatcagcgtcgccgtgaaaatcagcctagc
aacctagctccgtcaataccattagtggcagcagttgcttcccctgaacttgctagcggt
aaagtttggatacaatttgcaacccccgtaaaaacagaagaaaaagcacaatttttatcc
gttgatcagatgcttgaacaacaagagaaaaaatctattcttgaagaaaagcaaaaagta
accgaaaagaaagcccattctgtgagcccgctaggtggatttgtaacacagccaactcac
cgtgatttggttaaggaaaagcaagcagaacaagccaatccaccagcagaaaaaacgtct
gaactagacgtgcaaaaagcagaagtaaaagaacatattgcaccatttggcaatgtggtc
acccaactttctgagcgtgatttagttaaagaaaagaatgagcgtgttggcaagttccaa
tcaaaggcaactattgcaccagccattgaagcagatccacaacaagcgattgaaatacca
gtttcaaactatgaaggtagctatagttttaatggtcgattaggcacattctctcgtgct
gaacacaccaaagcagaaatgacagtgaccacactaccaaccgaaaatttagacactttt
gctatcaccgaatggcaaaattctaaatactatttctacggtaaaggtttcggtggctac
agcggtgcagtgagccaagtgcagtccgctcctcgctcaacgggtgttgaataa
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