Mannheimia pernigra 17CN0883: HV560_05950
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Entry
HV560_05950 CDS
T07233
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mpeg
Mannheimia pernigra 17CN0883
Pathway
mpeg03030
DNA replication
mpeg03430
Mismatch repair
mpeg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mpeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HV560_05950 (dnaE)
03430 Mismatch repair
HV560_05950 (dnaE)
03440 Homologous recombination
HV560_05950 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpeg03032
]
HV560_05950 (dnaE)
03400 DNA repair and recombination proteins [BR:
mpeg03400
]
HV560_05950 (dnaE)
Enzymes [BR:
mpeg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HV560_05950 (dnaE)
DNA replication proteins [BR:
mpeg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HV560_05950 (dnaE)
DNA repair and recombination proteins [BR:
mpeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HV560_05950 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
HTH_10
Motif
Other DBs
NCBI-ProteinID:
QLB42384
UniProt:
A0ABD7A8C8
LinkDB
All DBs
Position
1218162..1221638
Genome browser
AA seq
1158 aa
AA seq
DB search
MSDCRFVHLKVHSDFSMINGLAKVKSLVKTAVANNMVAMGLTDFTNFCGLVKFYGEALGS
GIKPIIGADIYVKSESGGDGYVELTLLAKNNKGYHNITQIISKAYQQGYFEYPMVKYEWL
AEFNEGIIILSGGRMGDVGKALLKENVQEATEKLAFYQQYYPNHFYLSVCRTGRADEERY
ITQAVKFARKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFR
SEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYFLPSFPTGELSTEDFLVKKSKEGLE
ERLAFLFPDSSERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPG
RGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAET
YGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLEKAFAAEPKL
PELYETDEEVKDLIDMARKLEGLTRNAGKHAGGVVIAPTSITDFSPLYCDSEGLHPVTHF
DKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLSREGKEPIRIEMIPLDDKKSFDLLL
AAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGKEEV
SYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMA
AQREVFEKGAESKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE
FMAAVMTSELDNTDKIVGFYDECINMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIKGV
GEGPIEAILAARNKDGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALMKN
LEDALKASDQHAKMEELGQSDMFGVLTETPEEVQNAYANTPKWSEQTILDGERATLGLYL
SGHPISRFLKELSHYAPSRLNELQPTFRGQMVTVSGMVMASRVAVTKRGSRIGIATIEDR
SGKLDITLFSEALENFGHLMQQDQIIVATGSVQFDDFSGGLKMSAREVLSLDDARSRFAK
SLALAISKEQLSANFLKKMTAIIAPHKEGTLPLHFYYQSPEGRALLKGGVEWRITPNEQM
FSELKDLLGENAVELEFE
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattgtcgtttcgttcatttaaaagtacacagtgatttctctatgattaatggt
ttagcgaaggttaaatcattagttaaaaccgctgtcgccaacaatatggtggcaatgggc
ttaaccgattttacaaatttttgcggcttagtaaaattttatggcgaagcattaggctcg
ggcattaaaccaattattggggctgatatttatgttaaatcagagtcaggtggtgatggc
tatgttgagcttaccttattagccaaaaataacaaaggctatcacaatatcactcaaatc
atttctaaagcttatcagcaaggctattttgaatatccgatggtcaaatatgaatggctt
gctgaattcaatgaaggtatcattattctctcgggcgggagaatgggcgatgtgggcaaa
gccttacttaaagaaaacgtgcaagaagctacggaaaaacttgccttttatcaacaatat
taccccaatcatttttacttgtctgtttgccgtacggggcgagcggacgaagaacgctac
atcacacaagcggttaaatttgcacgaaaaaatgcaattccattagttgcggtcaatgat
gttgttttcctcaaagaagatgactttgatgctcatgaaattcgtgttgcaattcatgat
agttacactttagacgatccaaaacgtccgaaaaaatattcacctaagcaatatttccgt
tcagaagaggaaatgtgcaagctctttgctgatttacctagtgcgttagcaaatacggta
gaaattgctaagcgttgttcagtgactgtgcgtttaggggaatatttcctgccaagtttt
ccaacgggtgagctttctaccgaagattttttagtgaaaaaatcaaaagaggggttggag
gagcgtttagcatttttattccctgattcctcagagcgagctaacaagcggtcagtttat
gacgaaagattgcaagttgaattagatgttatcaatcaaatgggatttcctggttatttc
ttgatcgtaatggagtttattcaatggtcgaaagataatggcattcctgttggtcctggg
cgtggttcgggagcagggtcgttagttgcttatgcgttaaaaattacggatctcgatcca
ttagcatttgacttgcttttcgagcgttttttaaaccctgaacgtgtttcaatgcctgat
tttgacgtggatttctgtatggatgggcgagacagagttattgaacacgtggcggaaacc
tatgggcggcaagcagtatcacaaattattaccttcggtacaatggcagcgaaagcggta
attcgagatgtaggacgtgtgcttgggcatccttatagtttcgtggatcggatttctaaa
ctgatccctcctgatccaggtatgaccttagaaaaggcgtttgctgcggaaccaaaattg
ccagagctatatgaaaccgatgaggaagtgaaagaccttatcgatatggcgcgtaagctc
gaaggtttaacgcgtaatgcaggtaaacacgcaggtggagtggtcattgccccaacgtct
attactgatttttcaccactttattgcgatagcgaaggattacaccctgttacccatttt
gataaaaatgacgtggaatatgctgggctggtgaagtttgattttttagggctacgtacg
ctgactatcatcaaatgggcgttggaaatgataaatgagcggttatctcgtgagggtaaa
gagccgattcgaattgaaatgattccgcttgatgataagaaatcctttgatttattgctc
gccgcgaaaacaacggcggtattccagcttgaatcaaggggtatgaaagacttgatctca
cgcttaaaacccgactgttttgaagatattatcgcgctagtcgcattgttccgaccaggt
ccgcttgaatcaggtatggtgcagaactttatcgaccgtaaacatggtaaagaagaggtt
tcttacccagatccacaatatcagcacgaatgcttaaaaccaattttagagccgacatac
ggtgttattgtttaccaagagcaagtaatgcagattgcccaagagttggctggttataca
ctgggtggcgcggacttacttcgccgtgcaatgggaaagaaaaagcccgaagagatggcg
gctcaacgtgaagtgtttgaaaaaggggcagaatcaaaagggattgatggaaaacttgca
gggcaaatttttgacttagtagaaaagtttgcaggctatggttttaataaatcgcactca
gcagcgtatgccttggtttcttaccaaacgctttggttaaaagcccattatccagccgaa
tttatggccgctgtgatgacttcagaattggataataccgataaaatcgttggcttttac
gatgaatgtataaatatggggctaaccgttgtaccacctgatgtaaatagcggaaagcac
cgctttagcgtaaatgaaaaaggtgaaattgtgtatgggcttggtgcaattaaaggcgtt
ggagaaggtccgattgaggcgattttagctgctcgtaacaaagacggcaaattcaaagat
ttgtttgatttaactgctcgtgtcgatctgaaaaaaattaaccgtcgaacttttgaaagc
ctgattatgtcaggtgcttttgataaacttggtccacatcgtgcggcgttaatgaaaaat
ttagaagatgcgcttaaagcgtccgatcagcacgcgaaaatggaagagttagggcagagc
gatatgtttggtgtgctgactgaaacacccgaagaagtacaaaatgcctatgcaaatacg
ccaaaatggtctgaacagactattttagatggcgaacgtgcaacattagggctctattta
agtgggcatccaattagcagatttttgaaagagttatcgcactatgcccctagtcggtta
aacgagttacaaccgactttcagagggcaaatggtcacggtttctggtatggtaatggca
tcacgggtagcagtaacaaagcgtggtagccgtattggtatcgcaacgattgaagaccgt
tcgggtaagctcgatattacgcttttctctgaagcattggaaaattttgggcatttaatg
caacaagatcaaattattgtcgccacaggttctgtgcagtttgatgattttagtggtggt
ctaaaaatgtcggcaagggaagtgctttctcttgatgacgctcgcagcagatttgcaaaa
agtttggcacttgctattagtaaagagcagctttctgccaattttctcaaaaaaatgacc
gctatcatagcgcctcacaaggaaggcacgttaccactgcatttctattaccaaagtcca
gaggggcgtgcgttgctgaaagggggcgtagagtggcgaataacgcctaatgagcagatg
ttttcggaactaaaagatttactgggtgaaaatgcggtggaattagaatttgaataa
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