Mannheimia pernigra 17CN0883: HV560_09410
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Entry
HV560_09410 CDS
T07233
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
mpeg
Mannheimia pernigra 17CN0883
Brite
KEGG Orthology (KO) [BR:
mpeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpeg03021
]
HV560_09410 (rapA)
Transcription machinery [BR:
mpeg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
HV560_09410 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
NAT10_TcmA_helicase
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QLB43013
LinkDB
All DBs
Position
complement(1962769..1965681)
Genome browser
AA seq
970 aa
AA seq
DB search
MFLVGQRWLSESENNLGLGIVKAVDHRTVTIHFPAAEEERVYAISAAPLARVRFQAGDRI
SSLDGWQLDVTEVVENQGVAIYLGKRLDNNEDVVLPEMLLDHKISFSKPQDKLFSAQIDR
SDRFALRFRALEHQQAQYQSPLRGLRGVRASLIPHQLHIAKEVGQRLSPRVLLADEVGLG
KTIEAGMILQQQLFSGRAERVLVLVPESLQHQWLVEMLRRFNLKFSLFDEERCGDFDQQD
ENHDHTNENPFESESLVITSLNWLETAPQRAKQVLEANWDLLIVDEAHHLEWSEAQASVG
YQFVEQLAKQIPSVLLLTATPEQLGQESHFARLALLDSDRFYDYHRFVVEQMQYQPVADA
VSTLLSDKPLTNEEQNTIAELLSEQDTEPMFRAINSKKSDENDRLQARQELIRELIDRHG
TSRVLFRNTRQAVKGFPHREYHQISLEMPKQYQNALKVMGMMGSVSQTDLLYPEYLFQRM
NPNAKWTEFDPRIEWLITFLKNHREEKVLVICKQAETAIALEQVLREREAIRSAVFHEKM
SIVERDKAAAYFAQQEEGAQVLISSSIGSEGRNFQFAKDLVLFNLPDSPDLLEQSIGRLD
RIGQKNDIQIYVPCFNLSAQQMLAQWYHQGLNAFEETCPMGTAIFRELNEALQHFLKNPQ
LLEQFNDFLAKTRKRQQQLKTELEKGRDRLLELNSNGGEVAEQLANDIMKEDNNPHLVNF
ALQLFDVIGVEQEDLGEQSIVITPTGYMLVPDFPGLSEEGTTITFDRELALMREEVEFLT
WDHPMIRNGIDLITSGDIGKSAISLLMNNKLPAGTLLLEAIYIVETQAPKGLNLARFLPP
TPIRILVDNKGNNIAPQVPFAGLERQLKPVNKQMANKIAKMARADIEKLIKASEKAVMPQ
VKTVIETAKFEANCKLKAELHRLESLKMVNKNIRADEVEALEQQLNDTLVQIALANYRLD
CLRVIVSNKE
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgtttttagtcggtcagcgttggctaagtgaatcggaaaataatttaggtttagggatt
gtgaaagcggtggatcatcgcacggtgactattcactttcccgcagcagaagaagagcga
gtatatgcgatttcagccgcacctttagctcgtgtacgatttcaagcaggcgatagaatt
agcagccttgacggttggcagcttgatgtcacagaggttgttgaaaatcaaggcgttgct
atttatttaggaaaacggctagataataacgaagatgttgttttgcccgagatgttgctc
gatcacaaaattagctttagcaaaccgcaagataagcttttctcagcacaaattgatcgc
agtgatcgtttcgcgttacgttttcgagcgttagaacaccaacaggcacaatatcaatcg
ccgttaagaggcttacgaggcgttcgtgcaagtcttatccctcatcaattacatattgct
aaagaagtggggcagcgtttatcgccccgtgttttgcttgcggatgaagtgggtttagga
aaaacaattgaagcgggaatgatattacagcaacaactttttagtggcagagctgagcgt
gttttagtgctggtgccagaaagtttacaacatcaatggttagttgaaatgctgcgtcgt
tttaatttgaaattctctttatttgatgaagaacgctgtggagattttgatcagcaagac
gaaaaccacgatcacacaaacgagaatccatttgagagcgaatctttagtgattacctca
ctgaactggttagaaacagcccctcaacgagcaaagcaagtgcttgaggcaaactgggat
ctactgattgttgatgaagcacaccatctggaatggtcggaggcacaagcctcggtaggc
tatcaatttgttgagcagttggcgaaacaaattccatcagtactccttttaactgcaacg
cctgagcagttaggacaagagagccattttgcccgcttagcattattagattcagatcgc
ttttatgattaccatcgttttgtggtggagcaaatgcaatatcagcccgttgcggatgca
gtttctacattactaagcgataagcctttaaccaatgaggaacaaaataccattgcggaa
ctgttaagcgagcaagatactgagccaatgtttcgtgcgatcaatagcaaaaaatcggac
gaaaatgaccgcttgcaggcacgacaagagctaattcgtgagctgatagacagacacggc
actagccgagtgctatttagaaatactcgtcaggcggtgaaaggcttccctcatcgtgaa
taccatcaaattagtttggaaatgccgaagcaataccaaaatgctttaaaagtgatggga
atgatgggtagcgtgagccaaactgatttactttatccagagtatttatttcagcgaatg
aacccaaatgcgaaatggacggaatttgatcctcgcattgaatggctgataacttttttg
aaaaaccatcgagaagaaaaggtgttggtgatttgtaaacaagccgagaccgcaattgct
ttagagcaagtgctgcgtgagcgtgaggcgattcgctctgccgttttccacgaaaaaatg
tcgattgtagagcgtgataaagcggctgcttattttgctcaacaagaggaaggggcacaa
gttctgattagctcaagtattggttcagaaggacgaaacttccaattcgctaaagattta
gtgttgtttaatttaccagatagccctgatttattggagcagagcattggacgcttagac
cgtattgggcagaaaaatgatatccaaatttatgtgccttgttttaatttatcggctcaa
cagatgttggcacaatggtatcatcaaggtttaaatgcctttgaagaaacttgcccgatg
ggaaccgctattttccgtgagttgaatgaagcactgcaacatttcctgaaaaatccgcaa
cttttagaacaatttaacgactttttggcgaaaacccgtaaacgccaacaacaattaaaa
acagaattagaaaaagggcgagatagattattagaactcaactctaatggtggagaagtt
gcggagcagctcgccaatgacattatgaaggaagataataatccgcatttagtgaatttt
gctttacagttatttgatgtgattggtgttgagcaggaagatttaggcgagcagagcatt
gtgattacgccaacagggtatatgctagtgcctgattttccaggtttatcggaagaggga
acaacaattacctttgaccgtgaattagctttaatgcgtgaagaggtagaatttctgact
tgggatcaccctatgatccgaaatggtattgatttaattacctcaggcgatattggaaaa
tcagctatttcattgctgatgaataataaattacccgcaggcaccttgctgcttgaggca
atttatattgtggaaactcaagcaccaaaaggtttgaatttagctcgtttcttgccaccc
acacccattcggattttagtggataataaaggcaacaatattgctccacaagtgcccttt
gcaggacttgagcgtcagttaaagcctgtaaataagcagatggcaaataaaattgcgaaa
atggctcgagcagatattgaaaaattgattaaagcgagcgaaaaagcggtgatgcctcag
gttaaaacagttattgaaacggctaaatttgaagcaaattgcaaattaaaagcagaatta
caccgcttggaatcacttaaaatggtgaataaaaacattcgagccgatgaagtagaggca
ttagagcaacaattaaatgacacattagtacaaatagcactggcgaattaccgcttggat
tgcttgcgtgtgattgtaagtaataaagagtaa
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