Mycoplasma putrefaciens KS1: MPUT_0106
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Entry
MPUT_0106 CDS
T01599
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mpf
Mycoplasma putrefaciens KS1
Pathway
mpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MPUT_0106 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpf03019
]
MPUT_0106 (rnr)
03016 Transfer RNA biogenesis [BR:
mpf03016
]
MPUT_0106 (rnr)
Enzymes [BR:
mpf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MPUT_0106 (rnr)
Messenger RNA biogenesis [BR:
mpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MPUT_0106 (rnr)
Transfer RNA biogenesis [BR:
mpf03016
]
Prokaryotic type
tRNA degradation factors
MPUT_0106 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
OB_RNR_1st
RNase_II_C_S1
MGT5A_N
S1CSD-TOTE-2
DUF6452
Motif
Other DBs
NCBI-ProteinID:
AEM68510
UniProt:
A0A7U3ZS35
LinkDB
All DBs
Position
122825..124939
Genome browser
AA seq
704 aa
AA seq
DB search
MKSEIVKLIKKHKDKINLDSLLNSFKTIDHPLVKEILDHLEKENKIVISKLNNIYLLGDY
YKTGILKLNPKGFGFVNNFSDLEQEDFFVAPIDLNGCFGTDQVVYIVQTDQDQRIKAIII
ELIKREKNFLIGEIVRSYDKRFLDFVSNDKSFDNFRFVILNKAEFRYQEYQIIKAKIVNV
RDRKIFIRLQKIIGDVRKASDRIIAIAEEFQIKTEFNHNTLKDAELVNIAVEKQVEELKK
RQKRSLVDKMIVTIDGSDSKDLDDAICVEKLDNNHYKLYVAIADVSYYVKPKTALDNEAL
LRGNSTYLANKVIPMLPKILSNDLCSLNPNTKKFAMACEMEFDGNGIMLSKKVYETIIVS
KFRLNYKEVNQYFETKSWNHDKKSQEMIDIAYELYKKIEAHKLNRGTICFDVREPKIIMD
NNSKVVEITARSTGESEKLIEQFMVSANEAVAELIFEKKLPFIYRNHGKPNEDELVNWYK
SLKSFGINPKLTASQILDPKSINHTLAQIQEQIKDPVEIELLNISLLKYMDKAKYGLENI
GHFGLSSQCYTHFTSPIRRYSDLMVHRYLKQYLFEKDTREFVLESNEAFISRACNIINDT
ETTSVDCEREVIKACMAEYMSDKINTEYLGTISAVLKFGMFVQLDNMVEGLVHISNLADD
LVYDDENKILIKSDNTFYRMGQKVKVKLINADVKKRAIDFILVK
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgaagtctgaaattgttaagttaataaaaaaacacaaagataaaattaatttagatagt
ttattaaatagttttaaaacaattgaccatccattagtaaaagaaattcttgatcactta
gaaaaagaaaacaaaatagtaatctcaaaattaaataatatttatttactaggtgattac
tataaaactggtattttaaaattaaatcctaaggggtttggttttgttaataacttttct
gatctagaacaagaagatttttttgttgctccaattgatttaaatggttgttttggaact
gatcaagtagtttatattgttcaaactgatcaagaccagagaataaaagcaataattatt
gaactaattaaacgtgagaagaattttttaattggtgaaattgttagatcatatgataaa
aggtttctagactttgtttctaatgataagtcatttgataattttagatttgtaatttta
aataaagcggaatttagatatcaagaatatcaaataatcaaagcaaaaattgtcaatgtt
agagatcgaaaaatttttattagattacaaaaaatcattggtgatgttagaaaagcaagt
gatcgaattattgcaattgctgaagaatttcaaattaaaaccgagtttaatcacaatact
ttaaaagatgctgaattagtaaatattgctgttgaaaagcaagttgaagaattaaaaaaa
cgtcagaaaagatctctggttgataaaatgattgttactattgatggtagcgattcaaag
gatttagatgatgcaatttgtgttgaaaagcttgataataatcactacaaactttatgtt
gcgattgctgatgttagctattatgttaaaccaaaaactgcacttgacaatgaagcatta
cttagaggtaattctacttatttagctaataaagtaattccgatgttaccaaaaattctg
tctaatgatttgtgttcactaaatccaaataccaaaaagtttgctatggcttgtgagatg
gaatttgatggtaacggaattatgctatctaaaaaagtttatgaaactattatcgtttct
aaatttagactaaactataaagaagttaatcaatattttgaaaccaagtcatgaaatcat
gataaaaaaagtcaagaaatgattgatattgcttatgaattgtataaaaaaattgaagct
cataaactaaatagaggaaccatttgttttgatgtaagagaacctaaaatcattatggac
aataattctaaggtagttgaaattactgcaagaagtactggagaatcagaaaaactaatt
gaacaatttatggttagtgctaatgaagcggttgctgaacttatttttgaaaagaaacta
ccatttatctatcgaaatcatggtaaacccaatgaagatgaactagttaattggtacaag
tctttaaaatcatttggaattaatccaaaactaactgctagtcaaatcttagatcccaaa
agtattaatcacactttagctcaaattcaagaacaaattaaagatcctgttgaaatagaa
ttattaaatatttccttattaaaatatatggataaagctaaatacgggttagaaaatatt
ggtcattttggattatctagtcaatgttacactcattttacttcaccaattagaagatat
agtgacttaatggttcacagatatttaaaacaatatttatttgaaaaagatactagagaa
tttgttttagaatctaatgaagcttttatctcaagagcatgcaatattattaatgatact
gaaacaactagtgttgattgtgagcgcgaagttataaaagcatgtatggctgaatacatg
agtgataaaattaacacagaatatcttggaactatttcagctgttttaaaatttggaatg
tttgtgcaattagataatatggttgaaggcttagttcatatttcaaacttagccgatgat
ttagtttatgatgatgaaaataaaatattaattaaatctgataatactttttatagaatg
ggacaaaaagtaaaagtcaaattaatcaatgctgatgttaaaaaaagagcaattgacttt
attctagtaaagtaa
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