Mesotoga prima: Theba_0583
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Entry
Theba_0583 CDS
T02123
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mpg
Mesotoga prima
Pathway
mpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Theba_0583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpg03019
]
Theba_0583
03016 Transfer RNA biogenesis [BR:
mpg03016
]
Theba_0583
Enzymes [BR:
mpg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Theba_0583
Messenger RNA biogenesis [BR:
mpg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Theba_0583
Transfer RNA biogenesis [BR:
mpg03016
]
Prokaryotic type
tRNA degradation factors
Theba_0583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
AFK06302
UniProt:
I2F2Z9
LinkDB
All DBs
Position
630151..632364
Genome browser
AA seq
737 aa
AA seq
DB search
MKLSLKALKEEMTSKDYSPTTMRGLIVKLGLTDREDRALLKKYLEELTDSGEIIKDLKGR
YIVPGEKTIVGTIEFARRGTGAYISVEDEEDVFVAPEDSGFSIHGDTVLVEITGRYREIR
KGKVIKVISRNKKKVVGTFKTRGIMAFVVADDMRIKTDFYIPPEGFNGAKPDEKVLIKIT
RYPSPGRNPEGVVEKVIGDVFSPEADLMTVIYRQDLPEPGYFPEQVRKQAARVAKSIDLQ
EVRKREDLRNELVFTIDGDDAKDFDDAISIRKSREGNYILGVHIADVSHYVREGTQLDLE
AYSRGTSVYLLDTVIPMLPFELSNDICSLKPEEDRLTLSLLLEIDPVGRVVSSSVKNSVI
NSKKRLTYSEVNDFLNGEASSDISEKLRPVSESLKLSHELAQKIRDIRKKRGSVMDISSR
EVKIIFDEKGRVTDILPQSRGISEWIIEEFMILANETVAEIFNNQGLPFVYRIHDKPDPE
SMMQLKNYLEALGLKVKIPRNVHPKALQQILEKSKDHPLHSSIERVLVRGMKRAVYSDRN
IGHFGLASEAYTHFTSPIRRYPDLVVHRLLKDLIKNAGADLKNHSKNLEESLSKIASWAS
KRERIANEAEWDLVDMKKVEYISNHVGDSFEGVITGVTKFGIFVELTEKMISGLVHISTL
DDYYDFIEDQNILVGRRSKRVFRIGDQLEVKVVRADKTTMEIDFIIVNDNGKTTRRSKRS
SPDKSKGKNSRSHKKSR
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgaagctaagtttgaaagcattgaaagaagaaatgacctccaaggattattcacctacg
acaatgagaggtctcatagtgaagctcggcctaactgatcgggaggatagggcgttgctc
aagaagtatctcgaagaattgaccgattctggcgagattataaaggatttaaaaggaagg
tacattgttcctggtgaaaagactatagttggtactattgaattcgcaagaagagggacg
ggagcttatataagcgttgaagacgaagaggatgtttttgtcgctcccgaagacagtggt
ttttccattcatggagatactgttcttgtggaaataacgggaagatatcgagaaattaga
aaggggaaggtcatcaaagtaatcagtaggaataaaaagaaagtagtcggtacattcaag
accaggggcatcatggcttttgtcgtcgctgatgatatgaggataaagactgacttctat
atccctcccgaaggattcaatggagccaaacccgacgaaaaggttctaatcaagatcacc
agatatccttccccggggaggaatcctgaaggtgtcgtagaaaaggttattggtgacgtg
ttcagtcccgaagcagatttgatgacagttatttacagacaagaccttccagaaccgggt
tactttcctgagcaggtgagaaaacaagcagccagggttgcaaagagcattgatcttcaa
gaagttagaaaaagagaagaccttcgaaatgaattggttttcacaatagacggtgatgat
gcaaaagatttcgatgatgcaatatcgataagaaagagcagagaaggaaattacattctt
ggtgtacacattgcggatgtgtcgcattatgtacgagaggggactcagctagacctggaa
gcttattctagagggacttctgtttatttgctcgatacggttattccgatgctgccattt
gaactttcaaatgatatatgttctcttaaacctgaagaggacagacttactctttcgctg
ctgctggagattgaccctgttggacgtgtggtttcctcgtcagtgaagaattccgttatt
aactctaagaagagactaacatattcagaggttaacgatttcctaaatggtgaagcatct
tcagatatttcggagaaattgagaccagtttctgagagtctcaaattgtcgcacgaattg
gctcagaagatacgggacatccgtaagaagcggggatcagttatggatatttcatctaga
gaggttaagatcatctttgacgagaaaggcagggtaactgatattctgccacagagtaga
ggaatatccgaatggataatcgaggagttcatgatacttgcaaatgagactgttgctgag
atatttaacaatcaggggttaccgtttgtgtacagaattcacgataaaccagatccagaa
tcaatgatgcaactaaaaaattatctggaagcacttggattgaaagtcaagattccgaga
aacgttcatcctaaggctcttcagcaaatacttgagaagtctaaagatcaccccctccac
tcctccatagaaagagttctagtgagaggaatgaagcgagctgtctattctgacagaaat
atcggtcactttggactggcatctgaagcatacactcacttcacttctccaatcagaagg
tacccggatcttgttgttcacaggctgttaaaagatttgatcaagaatgccggggctgat
cttaagaaccattcaaagaatctggaggaaagtctttccaaaattgcctcgtgggcatcg
aagagagagagaattgcaaacgaagcggagtgggatcttgtggacatgaaaaaggtggag
tacatctccaaccatgtgggtgattcttttgaaggtgttatcacgggtgtaacaaaattt
ggaatctttgtggagttgaccgaaaaaatgatttctggtctagtccacatttcaacactg
gatgactattatgacttcattgaggaccagaatattcttgtgggaagaaggagcaagcgg
gtatttaggatcggagatcagcttgaggtgaaggttgtaagagcagacaagacaaccatg
gaaatcgatttcattattgtcaatgataacggaaagacgaccaggagaagtaagcgctcc
tctcccgataagtcgaagggaaaaaactcaaggagccataagaaatcacgttga
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