Mesotoga prima: Theba_1273
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Entry
Theba_1273 CDS
T02123
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpg
Mesotoga prima
Pathway
mpg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Theba_1273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpg03400
]
Theba_1273
Enzymes [BR:
mpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Theba_1273
DNA repair and recombination proteins [BR:
mpg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Theba_1273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_16
AAA_30
SSV1_D-63
AAA_22
SecA_DEAD
PIF1
Motif
Other DBs
NCBI-ProteinID:
AFK06961
UniProt:
I2F4V8
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All DBs
Position
1341182..1344220
Genome browser
AA seq
1012 aa
AA seq
DB search
MERVLYRVNEPISWVEKGNYNASRNLIIFPSERMLESFIEIHEKREGDGFFFSHDVFPFE
EIGTSSRIRSERLALLRKLLLGELRTVYTSFHGILRKTVPIEVFEELSFKVEVGGPMTIT
ESQLQSLGYSRSFSVTIPGEFAIRGGIVDVFIPGSEMPVRIDTFDREIESIRSFDPVSQK
SLQRLNEVLITPAAEGITASPFRETALKRIRAAEQATGVSDEILLDRLDTMDTTAGIFYE
RQSILLDFLEGYNVIFVKPDDAIVEYGRRERETLELLSEKAVRKFLYIRYGGVSSEVLMK
LKEYSIVSDGDVSSLDYDEELTEELQIIKRPRREEEYLPRIPVVDWTELEEGDYVVHKEY
GIGRYLGVRTVENILGTREYLLLEYRDGNKIYVPVDRVDRVHKYIGSTEGIQLNSLRGTA
WTRQKSKVNKEVKALISDLSNLYGSREVTSGVPLTGDSEMEKGFRDSFPYVETEDQQKAV
EEVMEDLQSTKPMDRLISGDAGYGKTEVALRAAFRTVVSGKQVAVLVPTTVLARQHYENF
ERRLNPFGIRVEILDRYRTDVQRNKLLKKLKKGEVDVVVGTHSLLSKEVGFADLGLVVVD
EEQLFGVLQKEHFKKLRLQVNVLSMSATPIPRTLYMSLSGLRDLSIISTPPAGRTSPEIY
VGQINDRLIRTAVLRETNRGGQTIFVHNRVTELQELLSRLRDLLPEVKIDVAHGQMNKSA
FERTIRDFYLGELDMLLCTTIIESGVDVPNANTLIVDDSHRYGLAQLYQLRGRVGRSNRR
AFSYFLYDPKRLSDPSRERLKALKEFSGAGSGMKIAMRDLEIRGFGTLLGAEQHGNINSV
GLYLYREMVEKAMRELHGEEEIGVEERTVDTELKNIPFDMVIPEEYVSDSIERLKIYRRI
AACKAQDEIDEIESELLDRFGRLPSQVNSLLEASRVRLGAFNIGIKIVEYDPHSESIVML
HGENHIRDSLGIKGRRLVVNEREGKSILYGVPERHLMRTLKSLFLGAERNVQ
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
ttggaacgagttttatatagagtgaatgaaccaatctcctgggttgaaaaaggaaattat
aatgcttcgcgaaacttgatcatcttcccaagtgagagaatgcttgaatccttcattgag
atccatgagaaacgtgaaggagacggcttctttttctctcatgatgtctttccatttgag
gaaataggtacttcttcgaggataagatcggaaaggttagccctgctcagaaagcttctc
ctcggagagctgagaacggtttatacttcttttcacggaatcctgagaaaaaccgtaccg
atcgaagttttcgaagagctgtccttcaaggttgaagtcggcggcccgatgacaatcacc
gagagccagcttcagagtctcggatattcgagatcattctcagttactatcccgggagag
ttcgcaataagaggtggcattgtagacgtcttcatacccggatcggaaatgccggtgagg
atagacaccttcgacagggaaattgagtccatcaggagtttcgatcccgtctcccagaag
agtctacaaaggttgaacgaagtgttgattactcctgccgcagaaggaattacggcttca
cctttcagagaaactgcattgaagcgaatcagggcggccgagcaggcgactggggtctca
gatgagattctcttagaccgactggataccatggacacaacggccggcatcttctacgaa
cgccagtcgatacttctcgactttctagaaggttacaacgttatctttgtgaagcccgac
gatgcgatcgtcgagtatggaagaagagaacgagaaacactggaactcctttccgaaaag
gcggtaagaaagttcctttacattaggtacgggggagtatcgtcggaagtgctgatgaag
ctcaaggaatattcgatcgtttccgacggcgacgtctcttctctagactacgacgaagaa
ctgactgaagaacttcagatcatcaagagaccgagaagagaagaggagtacttaccgaga
attcccgttgtcgactggacggaacttgaagagggagactacgtagtccataaggagtat
ggcatcgggcggtatcttggagtgagaacggtagagaatattttaggaacgagagaatat
cttctacttgaatacagagatgggaacaagatctatgtaccggtagacagggtagatcgg
gtccataaatatataggaagcaccgaaggaattcagctgaactccttgcgcggaactgcc
tggacgagacagaaatctaaggtcaacaaagaggtaaaggccctcatctcggacctgtcg
aacctctacggatctagagaagtcacttccggcgttccgctcactggagacagcgaaatg
gagaagggctttcgcgacagcttcccgtatgtcgagacagaagatcaacaaaaggcagta
gaagaagtaatggaagaccttcaaagcaccaaacctatggacagactcataagcggtgac
gcgggctatggaaagaccgaagttgctttacgcgctgcgttccgaacggtggtatccgga
aaacaggtggccgttttggttcccactacggtactggcccgacaacattacgaaaacttc
gaacgccggttgaatccctttggaataagagtcgagattctcgaccgttatcggaccgat
gtacagcgaaacaagcttttgaagaaactcaagaagggcgaagtcgatgttgtagtagga
acacactctctactttcgaaagaagtggggtttgccgacctcggtctcgtcgtggtcgac
gaagaacaacttttcggagtccttcagaaagagcatttcaagaagctccgccttcaggta
aacgttctctcaatgagcgcgactccgattccgagaactctttacatgtctctctccggt
ctgcgagatctttcgataatctccacaccgcctgcgggacgcacctctccagaaatctac
gttggacagatcaacgatagactgatcagaaccgcggtcctcagagagaccaataggggt
ggccagacgatcttcgttcacaacagagtgactgagctgcaggagttactctctcgattg
agagaccttctgcccgaagttaagatagacgtcgcccacgggcaaatgaacaagtccgca
ttcgagcgaacaatcagagacttctatcttggcgaactagacatgcttttgtgcacaacg
ataatcgagagcggagtcgacgttcctaatgccaatactcttatagtcgatgactctcat
agatacggacttgcccagctttatcagttgaggggaagagttggcagaagcaacagaagg
gcattctcgtactttctgtacgatccaaagagattgtccgatccgtcgagagagagactg
aaggctttgaaggagttttccggagcgggaagtggtatgaagatcgccatgcgggacctg
gagataagaggattcgggaccttattgggagcggagcagcatggaaacataaactccgtt
ggactttatctctaccgcgagatggtagaaaaggcaatgagggaacttcatggtgaagaa
gagatcggagtagaggagcgaaccgtcgatactgaacttaagaacattccattcgatatg
gttatccccgaggaatatgtttccgattccattgaaagattgaagatctatcggagaata
gccgcatgcaaagctcaggacgagatagatgagatcgaatcggagcttctggatagattc
ggtcggctcccctctcaggtcaactcgcttctcgaagcttcgagggtaagattaggcgca
ttcaacatcgggataaaaatcgtagaatacgatccacattcagagagtatagttatgtta
cacggtgaaaaccatattcgggattcattggggatcaaaggaagaaggttagttgtaaat
gaacgcgagggcaaatcgatactctacggcgtgccggaaagacatctcatgagaacactg
aaatcgctttttcttggagctgagagaaatgttcaatga
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