Monomorium pharaonis (pharaoh ant): 105827748
Help
Entry
105827748 CDS
T05760
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
mpha
Monomorium pharaonis (pharaoh ant)
Pathway
mpha04382
Cornified envelope formation
mpha04512
ECM-receptor interaction
mpha04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mpha00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105827748
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105827748
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105827748
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mpha04147
]
105827748
00536 Glycosaminoglycan binding proteins [BR:
mpha00536
]
105827748
Exosome [BR:
mpha04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105827748
Glycosaminoglycan binding proteins [BR:
mpha00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105827748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105827748
NCBI-ProteinID:
XP_028049476
LinkDB
All DBs
Position
10:20388869..20446894
Genome browser
AA seq
1844 aa
AA seq
DB search
MMRPRAAATSGIIGDAGRGISRPVPLVLRITCVLALLVHAATWIPIAEAVICKDSYKCDC
KGIKGHQGFSGIPGPQGTEGLPGEIGPDGPPGPKGEKGAAGEYGATGEKGYRGDDGIRGF
VGAPGLSGNPGLPGVVGPDGLDGCNGTDGRAGAPGIPGVFGPRGLPGPTGDYGFSGEPGD
GGINSVGSKGIRGNPGIDGLEGYQGPRGFPGDMGYPGDTGDFGAPGPPGLPGLQGDRGDT
VYGVKGQLGEQGDRGEPGPPGKVVEYKKPENSTAVKGPQGPKGMKGFYGDRGRKGEMGAK
GPLGRPGFLGIKGVKGEQGDDGPRGKQGVTGPPGPAGEKGEKGAPGFAGLPGSDGNDGES
GEEGNRGPPGKQGAEGEPGQYIPELDEIIAGNIGIQGDLGPPGEPGESGTPGLPGKVGFI
GPPGPPGPPGIPGLSGAKGSSIKGEQGDDGLPGPMGPQGHSGLPGLPGTMGAKGFPGVTI
TGPPGPDGNLGLPGLSGPPGERGDPGPPGEKGFPGKGIRIRGPTGERGLPGKPGISGPDG
WPGFPGPKGTKGFRGDDCGVCAPGLPGEKGERGESGLDGYPGASGFPGLPGPRGFKGIQG
KRGLQGPAGLQGDSGRSGIAGVQGPKGESGRIFLPPGEKFVGPPGDLGEKGLPGPEGIRG
PRGQPGPIGDTGVPGPKGEKGEHGSPGLPGRDGLPGWDGIPGEKGEDATIPIEFLRGDPG
YPGESGIKGIQGDKGNKGEPGDSAEYTAESRGNKGYKGARGAPGESGFKGLQGHPGDEGL
SGLPGEPGSPGISLQGSIGLKGYPGMPGDQGPRGTSGSPGPQGPVGFPGRIGNKGERGDP
GTNLTYGEIGERGWYGPKGDIGDHGPQGLPGRTGGDGSKGAKGAKGAPGYEGLSGLQGAK
GQHGDSIQGDRGFPGIPGQPGMSGRIGDVGSPGPDGPSGFDGMKGLKGEIGFIGRRGDDG
DVGPQGYQGMHGIQGQPGTPGEKGDVGETGDPGPRGWPGFDGIEGAVGPKGEVGDAGIPG
LPGVTGPLGLKGIRGNTGLEGLAGIPGENSFSGPQGDVGEPGFMGEVGPPGLTGFDGRPG
LPGEPGLATDGFNGLQGQKGEPGFDGYNGIPGPKGEIGDMGPDGLKGERGEQGFPGRPGS
PGISGRHGAKGERGPFGPPGFDGVKGKPGLSGDPGIIGRPGMPGEPGVRGVPGIMGAPGS
KGHVGEPGLPSYAFAQKGDIGNRGHDGFPGVKGQSGEPGYSGMPGLKGQIGDRGYPGSVG
FPGLPGFPGVPGDQGPRGAPGLSGEFAEPGEPGRPGLDGMPGIPGRPGQKGAPGEYGPNG
PKGISGDIGHSLRGPKGMVGEPGPRGFVGLPGIPGLEGLQGFPGAPGPKGFHGEPGWPAG
AAKGQPGEPGWPGLDGRSGPKGMKGDSGLAGFDGLPGPKGERGETGEPGLRGLPGPSGPQ
GPKGERGINPFPPFPRRGLPGDIGEPGLPGFPGLQGMMGEPGKDGLPGRQGETGMIGIPG
PQGPDGKDGPPGYQGPPGTTGRQGQPGFRGTPGIPAPNGIGPRDRGFYFARHSQSEMIPI
CPKNTVKIWEGFSLLHTMGNGRPYAQDLGAAGSCVKKFATMPFLFCNLNNVCDYANRNDY
SYWLSTTEPMPMMMTPIPAPEVGRYISRCSVCEAPTRVIAIHSQSMAIPECPGGWEEIWV
GYSFLMHRDAGADGGGQSLVSPGSCLEEFRVRPFIECRGLGTCNYFATATSYWLATIRNE
EMFRKPLQQTLKADHTSRVSRCTVCLRRRVTEVLKPFTSNSQRAPNNWGTAPVAPNRNVP
DYESRTPPSRGRYPNHRRVPYHYRRRGRVRGNPWERSTESPNNL
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atgatgcggcctagggccgcggcgacgtcggggatcatcggcgacgcgggccgcggcatc
tcgcggccggtcccgctcgtcctacgaatcacctgcgtccttgccctactggtgcacgcc
gccacgtggatcccgatcgccgaggctgtgatctgtaaggactcgtacaaatgcgattgt
aagggaataaagggccatcagggattttctgggatacccgggccccaaggaacggaagga
cttccaggtgagattggacccgatggaccccccggacctaaaggcgagaaaggggcggca
ggagaatatggagccaccggagaaaagggctaccggggcgatgacggtatacgagggttt
gtgggagccccaggactttcaggtaatcctggcctgcctggtgtggtgggtccagatgga
ttggacggatgcaacggaactgacggtcgcgctggtgcaccgggtatacccggagttttc
gggcctcgtggtttaccaggacctacgggcgattatggcttttcgggagagcctggcgat
ggaggtataaattcggtcggctccaaaggaattcgcgggaatcccggaatcgatggacta
gagggttatcaaggacctcgcgggttccccggcgacatgggttatccaggagacacgggc
gactttggtgcgccgggtcctcctggcttgccaggtttgcaaggtgatcgtggtgacacc
gtgtacggtgtgaaaggtcagcttggtgaacagggagataggggagagcctggaccaccg
ggcaaggtggtcgaatataagaagccagaaaattcgacggccgtaaagggaccacagggg
ccaaagggtatgaaaggcttttatggcgatcgaggtcgcaagggagagatgggcgccaag
ggtccgctgggtcgaccaggtttcttaggtattaaaggtgtaaaaggtgagcaaggtgat
gatggaccaagaggtaagcaaggtgtcacgggcccgccaggccctgctggtgagaaagga
gagaaaggagctccaggatttgctggactgcctggttcggatggaaacgatggagagtca
ggagaagaaggaaatcgtggtccacctggtaaacaaggagctgagggtgaacctggacaa
tacattccagaacttgatgagattattgccggaaatattggaattcaaggagatcttggc
cctcctggtgaacctggtgaatcaggaacaccgggtctgcccggaaaggtcggcttcata
ggaccaccaggaccaccaggaccaccgggtatccctggtctatcgggagcaaaaggctcg
tccataaaaggagaacaaggagatgatggcttaccagggcctatggggccgcaaggacat
tccggattgcccggtttacctggaactatgggagccaaaggattcccgggagtaacgata
actggaccaccaggaccagacgggaatctaggtcttccaggattatcaggcccacccggt
gaacgcggtgatcctggtcctccaggagagaaaggttttcctggaaaaggaataagaatt
cgtggaccaaccggagaacgaggtctccctggaaaacctggcatctctggacctgatggt
tggcctgggtttcctggtcccaaaggtaccaaaggttttcgaggagatgattgtggcgta
tgtgctccaggattacccggtgaaaaaggagaacgtggtgaatctggtttggacggatat
cctggagcttcaggatttcctggtctacccggaccacgcggattcaaaggaatacaagga
aagcgaggtttgcaaggcccggcgggacttcaaggcgatagcggaagatccggtattgcg
ggagttcaaggacctaaaggagaatcgggaagaatattccttccaccaggtgaaaagttt
gtgggtccacctggtgatttaggcgagaaaggcttacctggccccgaaggaatcagaggt
ccgcgtggacaaccgggacccatcggtgatacaggtgtaccaggaccaaaaggagaaaaa
ggtgaacatggttcccctggattgccgggaagagatggtttgccaggatgggatggcatt
cctggcgaaaaaggtgaagatgccacaataccaatcgagttcttacgcggagatccagga
tatccgggagaatcgggaatcaagggaattcaaggagataagggtaacaaaggagaacct
ggtgactccgcagaatacactgcagagagcaggggcaacaaaggctataaaggtgccaga
ggagctcccggtgaatctggtttcaaaggtctccaaggacatcctggtgatgaaggttta
tcaggtttacctggtgagcccggttctccaggaatttcgcttcaaggttctatcggtttg
aaaggatatcccggaatgccaggagaccagggtcctcgaggcacatcaggctcacctggg
ccacagggaccagtagggtttccgggtcgcattggtaacaaaggcgaacgaggagatccg
ggaacgaatttaacatatggtgagattggagaacgaggatggtatggtccgaagggtgac
atcggtgatcatggtccacaaggattgcctggccgaacaggaggggatggttcaaagggt
gccaagggtgctaagggagcgcctggttacgagggattgtctggacttcaaggagccaaa
ggtcaacatggagacagtatacaaggagatcgtggattcccgggaatacctggccagcct
ggaatgtctggaagaatcggagacgtcggttcccctggtcctgatggtccttccggtttt
gatggaatgaagggcttgaaaggagaaatcggctttatcggacgacgtggtgatgacggt
gacgtgggacctcaaggatatcaagggatgcacggtatacaaggtcaaccgggtactcca
ggagaaaagggagatgtcggcgaaaccggtgatccgggaccacgcggttggcccggtttc
gacggtatagaaggagcagtcggtcctaaaggagaggtgggagacgctggaattcccggt
ttaccaggagtgacaggaccgcttggattaaaaggcatcaggggtaacactggtcttgaa
ggattagcgggaatccctggcgaaaactccttcagcggtccccaaggtgacgtgggtgaa
cctggttttatgggagaagttgggccacctggtttaactggattcgatggacgaccaggt
ttaccgggagaaccaggattagccactgatggtttcaatggcttgcaaggacagaaaggt
gaacctggtttcgacggatataatggtatcccagggccaaaaggagaaattggtgatatg
ggtcctgatggattaaaaggtgaacgaggcgagcaaggctttccaggaagaccagggtca
cctggaatatccggtagacatggtgcgaaaggtgaaaggggcccatttggaccacctggc
tttgacggtgtgaaaggaaaacccggtctcagcggtgatccgggtataataggcagacca
ggaatgccgggtgagccgggtgtgagaggagtcccaggtattatgggtgctcccggatcg
aaaggtcatgtaggtgaacctggtttaccatcttatgcattcgcgcagaagggtgatatt
ggtaatcgcggccacgatggtttccctggtgtgaaaggacaatcaggtgaaccaggatat
agtggtatgcctggtcttaagggtcaaattggagacagaggatatccgggttctgttggt
tttcctggtttacctggtttccctggcgtgccaggtgatcaaggacctcgcggagctcca
ggattgtctggtgaatttgctgaacccggtgaacctggacgtcctggtctcgatggtatg
cctggtatcccaggacgcccaggacaaaaaggagctcctggtgaatatgggccgaacgga
cctaaaggaatttctggcgatataggtcatagccttcgcggtcctaaaggaatggttgga
gaaccaggtccgcgaggatttgtcggcttaccaggtataccaggtttagaaggattgcaa
ggcttccccggagcaccaggaccaaaaggtttccatggagaaccgggatggcctgcaggc
gctgccaaaggacaacccggcgaacccggatggcctggattagatggtcgatctggtccg
aaaggaatgaaaggtgactctggtcttgccggtttcgacggattgccaggaccgaaagga
gaaagaggagaaaccggtgaaccgggcctacgtgggctgcctggtccttcaggaccacag
ggaccgaaaggagaacgtggtataaatcctttcccgccattcccgagacgaggacttccc
ggtgatataggagaaccaggattacctggtttccctggactacagggaatgatgggtgaa
cctggcaaagacggcttgccgggacgacagggtgaaacaggaatgattggaattcctgga
ccgcaaggaccagatggtaaagatggacctcccggttatcaaggacctccaggaacaact
ggacgacaaggacagccaggttttcgtggcacaccaggaatacctgcgccgaatggaatt
ggcccgagggacagaggattctactttgctcgtcattcgcaatccgaaatgataccgatc
tgtccaaagaacaccgtgaagatatgggaaggattttcgctgttgcacactatgggcaat
ggacgaccttacgcgcaggaccttggcgctgctggcagctgcgtcaagaagtttgccact
atgcctttcttattctgtaatctgaataatgtatgtgattacgctaatcgtaacgactat
agttattggctcagcacaaccgagcctatgccaatgatgatgacaccaataccagcaccg
gaagttggtagatacatatcaagatgttctgtgtgcgaagcaccaactagggtaatagct
attcatagtcaatccatggcaatacccgagtgtccgggtggctgggaggaaatctgggtt
ggatacagtttcctcatgcatagagatgctggtgcggacggtggtggccagtctctggtc
tcgcccggatcttgcttggaggagttccgcgttagaccgttcatcgaatgccgcggtctt
ggcacttgcaactacttcgccacagcgacgtcatattggctagcaaccatccgcaacgag
gagatgttccgtaaaccactacagcagacgctcaaagctgaccacacgtcccgagtgagc
cgctgcactgtatgtctccgtcgacgagtcaccgaggttctgaaacccttcacgtccaat
agccaacgggctcccaataattggggcaccgctccggtagcaccaaatcgcaatgtgcct
gattatgaatctaggacaccacctagccggggaagatatcccaatcacagacgcgtaccc
tatcactaccgtagaagaggtcgcgtgcgcggcaatccttgggaacgatcgacagaatct
cctaacaatttgtag
DBGET
integrated database retrieval system
