Monomorium pharaonis (pharaoh ant): 105829338
Help
Entry
105829338 CDS
T05760
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
mpha
Monomorium pharaonis (pharaoh ant)
Pathway
mpha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mpha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105829338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mpha03041
]
105829338
03009 Ribosome biogenesis [BR:
mpha03009
]
105829338
Enzymes [BR:
mpha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105829338
Spliceosome [BR:
mpha03041
]
Complex A
U2 snRNP components
U2 related factors
105829338
Complex B
105829338
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105829338
Ribosome biogenesis [BR:
mpha03009
]
Eukaryotic type
90S particles
Helicases
105829338
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
SRP54
ResIII
T2SSE
Flavi_DEAD
AAA_7
ABC_tran
AAA_25
ATPase
AAA_16
AAA_30
Motif
Other DBs
NCBI-GeneID:
105829338
NCBI-ProteinID:
XP_012523551
LinkDB
All DBs
Position
Unknown
AA seq
719 aa
AA seq
DB search
MSKRRIEVVDPYIKRKAMETSISNNATTPGSTAAKSQVQFNPYTMLPYTPRYYELYKKRI
TLPVFEYRTDFMRLLAQHQCIVLVGETGSGKTTQIPQWCVEYSRSIGNKGVACTQPRRVA
AMSVAQRVSEEMDVALGQEVGYSIRFEDCSSPRTVLKYMTDGMLLREGMSDPMLDAYQVI
LLDEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH
PVEIFYTPEPERDYLEAAIRTVIQIQMCEEIAGDLLLFLTGQEEIEEACKRIKREMDNLG
PEVGELKCIPLYSTLPPNLQQRIFEPAPPTKPNGAIGRKVVVSTNIAETSLTIDGVVFVI
DPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDN
TYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTD
LGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMKF
AHIDGDHLTLLNVYHSFKQHMDDVQWCYDNYVNYRSLKSGDNVRQQLSRIMDRFVLKRTS
TDFNSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQVVQLHPSSCLDHKPEWVIYN
EFVLTTKNYIRTVTDIKPDWLLMIAPQYYDLQNFPQCEAKRQLELTQAKLDSKQYQEGF
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgcaggatcgaggtcgtggatccctatattaaacggaaagccatggagact
tccatttccaacaatgcaacaactccagggtccacagcggcgaagagccaagtacagttt
aatccatataccatgctgccatacacgccacgatattacgaactctataagaaaaggata
actctacctgtattcgagtaccgtactgattttatgaggttactggcccaacatcaatgt
atagttcttgttggagagacaggttctggcaaaactacacagataccacaatggtgtgtg
gagtattctagaagcattggaaataaaggagttgcttgtacacagccaagaagagtggca
gctatgagtgttgctcaaagagtgtcagaagaaatggacgttgccttaggtcaagaagta
ggatacagtattcgttttgaagattgtagttcaccaaggactgtgctgaaatacatgact
gacggtatgttgcttcgggaaggcatgtctgatcccatgttggatgcctatcaagtgata
ttgctagatgaagctcatgaaagaacgttagctactgatttactgatgggtgttttgaaa
gaagtgatcaaacaaagaccggatttgaaacttgtgattatgagtgctactttggacgct
ggaaagtttcagcagtactttgacaacgcaccgctcatgaacgtacctggtagaacgcat
ccggtcgagatattttacacgccggaaccagaaagggattatttggaagcggcaattaga
actgtcattcaaatacaaatgtgtgaagagattgccggagatcttttgctatttttaact
ggtcaggaggaaatcgaggaagcttgtaagagaattaaaagagaaatggacaatttagga
cctgaagtcggtgagctaaagtgtataccgctatattcgacactgccgccgaatcttcaa
cagagaatattcgaacctgctccacctaccaaacctaatggcgctattggccggaaagtc
gttgtctcgaccaatattgcagaaacctcattgactattgacggggttgtctttgtcata
gatccaggttttgccaagcaaaaagtttacaatcctaggattcgtgttgaatccctttta
gtgtcacctattagcaaggcttcggcccagcaaagagccggccgtgctggcagaacaaga
cctggaaagtgtttcagattatatacagaaaaggcatacaagaatgagatgcaagataat
acttatcctgaaattttgcgttctaatcttggaagtgttgtattgcaactgaagaaactt
ggcattgacgatctggtacattttgactttatggatccacctgcacctgaaactcttatg
agagctttggagcttctgaattatttggcagctcttgatgatgatgggaacctgacagat
ctcggcgcagtaatggcagaatttccattggatcctcaattagcgaagatgcttatagct
tcttgcaatcataattgtagcaatgagatactcagtattaccgctatgctttcagtccca
cagtgctttgtgaggccgaacgaatcgaaaaaagccgcggatgatgcgaaaatgaaattt
gcacatattgacggtgatcatctgacgctacttaacgtgtatcattctttcaaacaacat
atggatgatgtccaatggtgttatgataattatgtgaattatcgatcgttaaagagcgga
gacaatgtaaggcaacagttgagtcgaataatggatagatttgtattaaaacgcacttcg
acggacttcaattcaaaagattattacattaacatcaggaaagctcttgttaatgggttt
ttcatgcaggtagcgcatttagaaagaacaggacattacttgactatcaaagataaccag
gtagtacaacttcatccaagcagttgtctcgaccacaaaccagaatgggttatttataat
gaatttgtattaactactaaaaattatatcagaacagtcaccgatataaaacctgattgg
ttgctcatgatagcaccacaatattatgacttacaaaattttcctcaatgtgaagcaaag
agacagctcgaactcacccaggcaaaattagactcgaaacaatatcaggaaggcttctaa
DBGET
integrated database retrieval system
