Monomorium pharaonis (pharaoh ant): 105829649
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Entry
105829649 CDS
T05760
Name
(RefSeq) ATP-dependent RNA helicase WM6 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mpha
Monomorium pharaonis (pharaoh ant)
Pathway
mpha03013
Nucleocytoplasmic transport
mpha03015
mRNA surveillance pathway
mpha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mpha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105829649
09122 Translation
03013 Nucleocytoplasmic transport
105829649
03015 mRNA surveillance pathway
105829649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpha03019
]
105829649
03041 Spliceosome [BR:
mpha03041
]
105829649
Enzymes [BR:
mpha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105829649
Messenger RNA biogenesis [BR:
mpha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105829649
Spliceosome [BR:
mpha03041
]
Complex C
Other components
EJC/TREX
105829649
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105829649
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105829649
NCBI-ProteinID:
XP_012524127
LinkDB
All DBs
Position
3:complement(22527823..22533829)
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AA seq
438 aa
AA seq
DB search
MFRYKPIGVISHYTMADNDDLLDYEDEEQTEQVVDGSGDVPAKKEVKGTYVSIHSSGFRD
FLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEL
TENQVYVLVMCHTRELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKTVCPHIV
VGTPGRILALVRNKKLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHSKQVMMFSA
TLSKEIRPVCKKFMQDPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLFELLDVLEFNQ
VVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGR
GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDESDAKILNDVQERFDV
NITELPDEIDLASYIEGR
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtacaaacctattggagtgatcagtcactatacaatggcggataacgatgat
cttctggattatgaggacgaagagcagactgagcaagtagttgatggaagtggagatgtt
cctgctaagaaggaagtcaagggcacatatgtctctatccatagcagtggtttcagagat
ttccttctcaagccagaaattcttcgcgccattgttgactgtggctttgagcatccatct
gaagtacagcacgaatgtatcccacaagctgttcttggtatggatatcctgtgccaagca
aaatcaggtatggggaagacagctgtgttcgtgttagccactctccaacaattggaattg
acggaaaaccaagtctatgtcttagtaatgtgtcacactcgagaactggcttttcaaatc
agtaaagaatatgagaggtttagcaagtatatgccgcatgtaaaggttggtgtattcttt
ggaggtttacctatccagaaagacgaagaggtcctgaaaactgtgtgtcctcatatcgtt
gttggcacacctggccgtatccttgctcttgtgcgcaacaagaaattgaatttgaagcac
ctgaaacactttatacttgacgaatgcgacaagatgcttgagttactagatatgcgccgg
gacgtacaggaaatattcagaagcacgccacacagcaagcaagtcatgatgttcagtgcc
acgctgtccaaggagatacgtcctgtctgcaaaaagttcatgcaagatcccatggaggtc
tatgtcgatgatgaagcaaagctcactttgaatggtctccagcagcattacgttaaattg
aaggagaatgagaagaacaagaagttgttcgaactacttgatgtacttgagtttaatcag
gttgtcatatttgtgaagtctgtgcaaagatgtatggctttagcgcaacttctgacggaa
cagaatttccctgcgattgggattcatcggggcatgacacaagaagagagattgtccaga
tatcaacagtttaaggatttccagaaacgtattttggtagcaacaaacttgtttggaaga
ggcatggacatagaacgggtaaacattgtttttaactatgatatgccagaagattctgac
acatacctgcacagagtggcgcgtgctgggcgttttggcacaaagggccttgccattaca
tttgtaagcgacgagagtgacgccaagatattgaatgatgttcaagagaggtttgacgta
aatattacagaattaccggacgaaatcgatctcgcttcatatattgagggacgatga
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