Monomorium pharaonis (pharaoh ant): 105830781
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Entry
105830781 CDS
T05760
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mpha
Monomorium pharaonis (pharaoh ant)
Pathway
mpha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mpha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105830781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpha03019
]
105830781
03041 Spliceosome [BR:
mpha03041
]
105830781
Messenger RNA biogenesis [BR:
mpha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105830781
Spliceosome [BR:
mpha03041
]
Complex B
Other components
Prp19-related factors
105830781
Complex C
105830781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
RPN7
PPR
TPR_10
NRDE-2
Mad3_BUB1_I
ARM_TT21_C
ARM_TT21
DHR-2_Lobe_A
SNAP
Motif
Other DBs
NCBI-GeneID:
105830781
NCBI-ProteinID:
XP_012525785
LinkDB
All DBs
Position
3:1168465..1190531
Genome browser
AA seq
844 aa
AA seq
DB search
MLERKDDEGNLYTFQNEEDLPYEEEILRNPYSVKHWQRYIDHLKNTNSKNLNVVYERALK
ELPGSYKLWYNYLRQRVSQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCMLMTE
ECYITRTRQVFDRSLRALPITQHHRIWPLYIHFLKKHNVYETAVRVFRRYLKLAPEDTEE
YIEYLISIGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDA
IIRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQF
EELSLKKLIEEAARNPTEEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGQPHEIINTYTEAVQTVQSQLAVGKLHTLWVAFGKFYEENGQIEDARVVFEKATH
VAYTKVDDLASVWCEWAEIEIRHGNCKEALKLMHRATTMPARKVAYHDETETVQMRLYKS
LKVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEYCPPKYAKALYLLYAKLE
EEHGLARHAMSVYERATNAVLPEERFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDEN
TREMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREM
LRIKRSVQAMYNTQVNMMSAQMLNNVSNQVSDVSMDAMRLLDNKISSTTDNAADIKGGIK
FVRGITEKDGKADSHVNNPDEIDIDIDDENDNDAEEIEEDIPVEKQTIPSQVFGSLKPVQ
AEED
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgttagaacgtaaggatgacgaaggaaatttatatacctttcagaatgaggaggactta
ccatatgaagaagaaattttacgaaatccatattcagtgaaacattggcaacgctatatt
gatcatctgaaaaatacaaatagtaagaatttaaatgttgtatatgaacgagcactaaaa
gaacttccgggcagttacaagctttggtataattatttgcgacaacgtgtgagtcaattg
aaaggtcgatgtataacagatccattatatgaagatgttaataatgcatttgaacgtgcg
ttagtatttatgcacaaaatgcctcgtatatggatggattattgtatgttaatgaccgaa
gaatgttacataacacgaacacgtcaagtatttgatcgatctctgagagcacttcctatc
acacagcatcatcgtatatggccattatacattcattttttaaaaaaacacaatgtctat
gagactgctgttagagtctttaggagatatttaaagttagcacctgaagatacagaagaa
tatatagaatatttgatatcaattggaagactcgacgaggctgctgtgaaacttgcacag
atcgttaatcaggacgattttgtatcgaaacacggaaagtctaatcatcaattatggaat
gaattgtgtgatttaatatcaaaaaatccttcgaagataaagtctttgaatgtagatgct
attattagaggtggcttaagacgttatacagatcagttgggacctttatggaattcatta
gcagattattacgtccgaagtggtctctttgaaagggcgagggatatttacgaagaggct
atacagactgtcactaccgttagagattttacacaagttttcgatgcttatgcgcaattt
gaagaacttagtcttaaaaagctcatagaggaagcagcaagaaatcctactgaagaagat
gacatcaagttagaattgagactagcacgattggaacatcttatggaaaggagacttttg
ttgctcaattctgtattattacgacaaaatccacataatgtagcagaatggcataaaaga
gtaaaactttacgaaggacaaccacatgagataattaatacatatacagaagcagtgcaa
acagtgcaatcacagttggcagttggtaaattacatacattatgggttgcatttggcaaa
ttttacgaagaaaacgggcaaatagaagatgctagagtggtatttgaaaaggcaactcat
gttgcatacaccaaggtagatgatcttgcctcggtatggtgcgagtgggcagaaattgaa
attagacatgggaattgcaaagaagctttaaaacttatgcatcgtgccactacaatgcca
gctagaaaagtggcataccatgatgaaacagaaacagtacaaatgagattatacaaatct
ttaaaagtatggtctatgtatgcagatttggaagaaagttttggaacatttaagacctgt
aaagcagtctacgacaaaatcatcgatttgaaaattgcaactcctcaaattattattaat
tatggactatttttggaagaaaataattattttgaagaagcatttagggcatatgaaaaa
ggcattgcattgtttaagtggcctaatgtttatgacatttggaacacgtatctcacaaaa
tttttaaaacgttacggtggtacgaaattagaacgcactagagatctatttgagcaatgt
ttagaatattgtcctccaaaatatgccaaagccttgtatttgttatatgcaaaattagaa
gaagaacatggcttagcgagacatgccatgtctgtatatgaacgcgcgacaaatgctgtc
ctcccggaagaaagatttgacatgtttaatatatatattaaaaaagctgctgacatatat
ggtgtgccgaaaactcggcaaatatatgaaaaggctatagaagtcttaaatgatgagaac
acaagagaaatgtgtttgcgatttgcagaaatggagactaaattaggagaagtagataga
gcgagagccatatatgcgcattgtagtcaaatatgtgatccaagagttacatccaacttt
tggcaaatttggaaagaatttgaagtcaggcacggaaatgaggatacaatgcgcgaaatg
cttcgaatcaagcgtagtgtgcaagctatgtataatactcaagtaaacatgatgtctgca
caaatgttaaataacgtatccaaccaagtatcagatgtatcaatggatgctatgcgttta
ttagataataaaatttcatcaactacagataatgctgctgatatcaaaggaggtattaaa
tttgtacgtggcataacagaaaaagatggtaaagcagactctcatgtgaataatccagat
gagattgatatcgacatagatgatgaaaatgataacgatgcagaagaaatagaagaagat
ataccggttgagaaacagactataccatcacaagtatttggtagtttaaaaccagttcaa
gctgaagaggattga
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