Monomorium pharaonis (pharaoh ant): 105833387
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Entry
105833387 CDS
T05760
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mpha
Monomorium pharaonis (pharaoh ant)
Pathway
mpha03013
Nucleocytoplasmic transport
mpha03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mpha00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105833387
03015 mRNA surveillance pathway
105833387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpha03019
]
105833387
Enzymes [BR:
mpha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105833387
5.6.2.5 RNA 5'-3' helicase
105833387
Messenger RNA biogenesis [BR:
mpha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105833387
mRNA cycle factors
Common to processing body (P body) and stress granule
105833387
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
NPHP3_N
ATPase
SRP54
nSTAND3
AAA_22
AAA_16
AAA_10
AAA_7
AAA
AAA_5
AAA_32
Motif
Other DBs
NCBI-GeneID:
105833387
NCBI-ProteinID:
XP_012530561
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSPSQTQASQHDATQTQSSQ
PIQVNGTNGSSSLELKISGAAQSLAELQFEEEEEEAYYNRDLPDHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCATRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLSWLVKFPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECISNFVVDFIWKSTSFDRMQSALRKFAVDDSS
VSGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGAQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNMPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGATASA
RNKSGPRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAV
GDFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcgtacgggcctagcagccagaccctcacgttcctcgacaccgaggag
accgatctgatcggcgcggacacgcagggcagcgagttcgacttcaccgacttcaccctg
ccgtcgccgagtcaaacccaggcatcgcagcacgacgcgacccagacacagtccagtcaa
cccattcaggttaatgggacgaacggtagctcatcgttggaattgaagatttctggagct
gctcagagcctcgccgagttacagttcgaggaagaggaagaagaggcgtattacaatcgc
gatttacctgatcatgcgtgtaaatactgcggtatccatgaggcgtcctgcgtggtcatg
tgcaacgtctgccggaagtggttctgcaacggacgcggcaatacgtcgggatcgcatatt
atcaatcatcttgtccgtgctaaacacaaggaagtcactttacacagagatggtcctctt
ggagaaactgttttggaatgttattcctgtgctacaagaaacgtttttgtattgggtttt
attcctgctaaagctgattccgtagttgtactgctctgccgccaaccatgtgcggcacag
agttctttgaaggatatgaattgggatcaagaacaatggaagccactgatcgaagatcgc
agttttttgtcgtggttagtgaagtttccatccgaacaagaacagttgagagccaggcag
atctctgcgcaacagattaataaattagaggagttatggcgggacaatgtcgatgccact
tttcaagatctagaaaaacctggagtggacgaggaaccgcagcaggttctactacgctat
gaggatggatatcagtatcaaaatatctttggtccgctcgtgaaattggaagccgattat
gataaacgcctgaaagaatctcagactcaagagaatattgaggtgcgatgggacgttgga
ttgaataagaagactattgcgtattttatgctggccaaaacagatggagatatgaaattg
atgcatggagatgaattgaggctccgttatcttggagaacttcataagccttggtctgga
attggacacgtgattaagattcctgataattatggagaggaagttggaattgagctgaag
aataattctggagcaccaacggaatgcattagcaattttgtcgttgactttatttggaag
agcacaagttttgatcgaatgcaatccgcattacgtaagtttgctgtggacgactcatct
gtgtcgggttacatatatcatagactattgggacatgaagtagaagaggttctgtttcgt
tgtcatctccctaaacattttagcgcaccgaatctacctgacttgaacagatcacaggtg
tacgctgtgaaacacgcgatacaacgacctttatctctaatccaaggaccacctggaaca
ggtaaaaccgtgacaagcgcgactatagtttatcagctggtgaaacagaacggtggtccg
gttctcgtatgcgctccttcaaacactgctgtcgatcaattgaccgagaagatacataaa
tcaaatttgaaagttgtacgattgtgtgccaaatcgcgagaggccatcgattcgccggtg
agttttcttgcactacataatcaaataaagaatatggaaacgaacacagagttgcagaag
ttgcaacagctgaaagatgaaacaggcgaattgtcaagcgtcgacgagaaacgctataga
ctcttgaaaaaagccgcggaaaaggagcttctcgaagcagctgatgtaatttgttgcact
tgcgtcggcgccggtgatccgaggctgcaccgattgaagttccattctatacttatcgac
gagagcatgcaggctactgagccagaatgcatggtaccggttgttctaggagcgaagcaa
ttgatcctcgtcggagatcactgccaattaggtccggtggtgatgtgcaagaaagccgct
agagccggcttatcccaatctctgttcgagagactggtagtgctaggaattcgaccattc
cgtttggaagtacaatatcgcatgcatcctgatctctcacgatttccatcaaatttcttc
tacgaaggttctctacagaatggcgtttgcgctgatgagagaaaattattgaaaattgat
tttccctggcctgcacccgacaaaccgatgtttttctacgttacgcaaggtcaagaggag
atagctggaagtggaacatcttatttgaatcgtaccgaggcatctaacgtggaaaagata
actactcgattcttacgctgtggcgtgaaaccggagcagattggagtgataaccccgtac
gaaggtcaacgagcttatcttgtgcagtatatgcaataccaaggttctcttcactcgaaa
ttgtatcaggaaatcgaagtggcgagcgtggacgcttttcagggacgagagaaggacata
ataataatgtcctgcgtacgatctaatgaacatcaaggcattggattcttgaatgatcca
aggagattaaatgtggcgttgactcgtgcaaaatatggtattatcatcgtaggaaatcct
aaggtgctctcgaaacagccgctctggaaccacctgcttagcttttacaaggagcaaaag
gtgttagttgaaggaccattgaacaatctgaaggagtccatgattcaattcgctaagcca
aagaaactcgtgaacgcggccaacccgggctcgcactttatgtccacgtcgatgtacgat
gcgcgcgaggccttgatccccggatcggtgtatgatcgttctggcgcgcaagtaaacggc
acgcagaatcataatccttactaccaaagaaacgtaccgctcgacattttcagtcgtacc
cacgacaccatcagctacatcagtccggagcgggcgcaggcggcgatgaacaacatgccc
gtgccggttggcatgtttatgaatatggcgcacgtgccgccgcgtttctataatcagcat
cagcaagccctacaggcacgccaaaatcagagaaatcgacgtggcgccactgcttccgcg
aggaacaagtcaggcccgcgtatgggcaagctgagtcagaccgagcagaatacgcagccg
tacagtcaaccaggtctgccattgacgcagggtacaacccaggggatgtcccagcctggt
tttagtctctcgcagcctggcctcagtcaggcggaactctctcaggactcgtttgcggtc
ggcgatttccagtcgcagatggacggcctgttatcacaggactcgacttaccagggtgac
cgaagtggtttctatcagtcgggccagtcgcaagccggaggacagttctcgcagccctac
tga
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