Monomorium pharaonis (pharaoh ant): 105833546
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Entry
105833546 CDS
T05760
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
mpha
Monomorium pharaonis (pharaoh ant)
Pathway
mpha03008
Ribosome biogenesis in eukaryotes
mpha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpha00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105833546
09123 Folding, sorting and degradation
03018 RNA degradation
105833546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpha03021
]
105833546
03019 Messenger RNA biogenesis [BR:
mpha03019
]
105833546
03009 Ribosome biogenesis [BR:
mpha03009
]
105833546
03016 Transfer RNA biogenesis [BR:
mpha03016
]
105833546
Transcription machinery [BR:
mpha03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105833546
Messenger RNA biogenesis [BR:
mpha03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
105833546
Ribosome biogenesis [BR:
mpha03009
]
Eukaryotic type
Pre-60S particles
RNases
105833546
Transfer RNA biogenesis [BR:
mpha03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
105833546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
105833546
NCBI-ProteinID:
XP_012530820
LinkDB
All DBs
Position
11:complement(1621342..1661471)
Genome browser
AA seq
964 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIVECIEQKPISADGTCIPVNSADPNPNGVEFDNLYLDMNGIIH
PCTHPEDKPAPKDEDEMMEAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETTEKINEIERIRSELSLKGATLPPEKPKEEHFDSNCITPGTPFMARLSACLHYYIH
ERLNNDPGWRNIKVILSDANVPGEGEHKIMDFIRRQRAQPDHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKPNKPKPCDICGQLGHEMRDCTGAEPNQKPEENTFGSECQFIFV
RLNVLREYLERELHMPNLPFKYDFERAVDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLV
TLYKKAVYKTGGFLTDSGDVNLDRVQVIMSELGDVEDEIFKKRQQNELAFKQREKDKKKR
NEIISNFKPTWIPAGQFAPNALGQGVQPKAIEDARYEAFKMRVMGRNYNTSAAQSSTSAN
HALESMMRPENTDNKGQNTANKGQKRKIDEVSNNDSDDDQAHDEVRLWEDGFKDRYYESK
FDVSPDNLAFRNNVALQYVRGLCWVLRYYYQGCASWRWYFPYHYAPFASDFINIGGLSTE
FEKNTVPFRPLEQLMGVFPAASRKHVPEPWAKLMTDPKSQIIDFYPEDFKIDLNGKKFAW
QGVALLPFVDEKRLFKALAPYYDSLTEAEKKRNVRGDDRLYVGIGNKGYDFVKGLYTNRI
GFDKEVEISINGMRGTVVLSEDCVSDGGMLPSPVRGLPVRNNKVYCIKFKDPKYDSNHIF
LSRKLKGANDPPRVLKPQDFEAMNRKNGTQWKPQIGFTRSNSAASLGQAGHRMLEHHMNH
NNRPAAYANIPPPTNLYSPFQGYRNEHQQSGYGFNSAGSSHTRHGPWGSGYGMRQPNHRP
SEYQQHRNHSSYDNHRQHSSRQNYQTAPYGYHSQRGNYSSTRGGGGGGGSGGGGGRRDTW
RRTM
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccggcattttttcgttggctaagccgcaaatatccttctgtgattgtcgaa
tgcatcgagcagaagccaatatctgcagatggaacatgcattcctgtaaattcagcagac
ccgaatcccaatggggtggaatttgataatttgtatcttgatatgaatggcataatacat
ccttgcacacatcccgaagataagccagcacctaaggatgaggatgaaatgatggaggcc
attttcgaatgtattgacagattatttcgtattgtgagaccaagaaagttgctttacatg
gcgattgatggagttgcacccagagctaaaatgaatcaacagagatctcgacgatttcgt
gcatcgaaagaaacaacagaaaaaattaatgaaatagaaagaatacgttccgaattgtct
ctcaaaggtgcaaccttacctcctgaaaaaccaaaggaagaacatttcgatagtaattgt
attacaccgggtacaccatttatggcaagattatcggcatgcttgcattactacattcat
gagcgactgaataatgatccaggttggaggaatattaaagtaatattaagcgatgctaat
gttcctggtgaaggtgaacataaaataatggattttatacgtcggcagagagcgcaaccc
gatcacgatcctaatacacaacatgttttatgtggagcggacgcagatttaattatgtta
ggtctcgctacacacgaacctaattttacaattattcgcgaagaatttaaaccgaataaa
ccaaagccatgtgatatatgtggccagttagggcatgaaatgcgtgactgtacgggtgcg
gagccgaaccaaaaaccagaggagaatacatttggatccgaatgccagttcatatttgta
cggttaaatgttctcagagaatatttagaaagagaattgcatatgccaaatctacctttc
aaatatgattttgagcgagctgtcgatgattgggtgtttatgtgtttcttcgtaggaaat
gattttttacctcacctcccttctctggaaattagagaaggtgcaattgacagactcgtt
actttatacaaaaaagcagtatataaaacaggaggtttcttgacagatagcggtgatgtt
aatttagatcgtgtacaagtgataatgtcagagcttggtgatgtagaagatgaaatcttt
aagaagaggcaacaaaatgaattggcttttaaacaacgtgagaaggataaaaagaaaaga
aacgaaattatcagtaattttaagccaacatggattcctgctggccaatttgcaccaaat
gctcttggacaaggggtacaacctaaagctatcgaggatgcacgttatgaagcttttaaa
atgcgtgtaatgggtagaaattataatacgagtgctgcgcaaagtagtacgagtgctaat
cacgccttagaaagcatgatgagacccgagaacactgataataaaggacaaaatacagcg
aataaaggacagaaacgaaaaattgacgaagtgtctaataatgactcagatgatgatcag
gcgcatgacgaagtgcgcctttgggaagacggttttaaagatcggtactacgaatctaaa
tttgacgtatctcccgataatctcgcatttagaaataacgtagctttacaatatgtacga
ggtttatgttgggttttacgatattattatcaaggttgtgcttcttggcgatggtatttt
ccatatcattacgcaccttttgcaagcgattttattaatattggtggtctttctacagaa
tttgagaaaaacactgtaccatttcgaccactagagcaattgatgggtgtatttcccgct
gctagccgaaaacatgtacctgagccatgggcgaaattaatgacggatcccaaatcgcag
attattgatttttatccagaagattttaaaatcgacttgaatggaaagaagtttgcatgg
caaggtgtagctttgcttccattcgttgatgagaaaagattattcaaggctttggcacca
tattatgacagtttaacagaagcagaaaaaaagagaaatgttcgcggtgacgacaggctg
tacgtcggaatagggaacaagggttatgattttgtaaaaggtctatacacgaatcgcatt
gggtttgacaaggaggttgagataagtataaacgggatgcgaggtacggtggtgctttcg
gaagattgtgtgagtgacggaggcatgttgccctcacccgtgagaggtttgccggtcagg
aacaacaaagtgtactgtatcaagttcaaggatcccaagtacgatagcaatcacattttc
ctgtctcgcaaactaaaaggcgccaatgatccaccgcgcgtcctgaagccccaagacttc
gaagctatgaatcgcaagaacgggacacagtggaagccacagataggtttcactcggtct
aactcagcagcctcattgggacaagcagggcacaggatgctcgagcatcatatgaaccat
aataacaggccggctgcttatgcgaatattcccccaccaacaaatttatattctccgttt
cagggttatcgaaacgagcaccagcagtcgggatacggtttcaatagcgccggttcgagt
catacccgtcatggaccatggggatccggttacggcatgcgccagccgaatcatcggccc
tcggagtatcagcaacatcgtaatcattcatcatacgataatcatcgtcagcattcctcg
cggcagaattatcagaccgcaccgtacggctaccacagtcaacgagggaattactcgtcg
actcgaggagggggaggaggaggaggaagtggaggtggaggaggccgccgagatacatgg
cgtcgaacgatgtag
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