KEGG   Monomorium pharaonis (pharaoh ant): 105834601
Entry
105834601         CDS       T05760                                 
Name
(RefSeq) cleavage stimulation factor subunit 1 isoform X1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
mpha  Monomorium pharaonis (pharaoh ant)
Pathway
mpha03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mpha00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    105834601
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mpha03019]
    105834601
Messenger RNA biogenesis [BR:mpha03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     105834601
SSDB
Motif
Pfam: WD40 WD40_Prp19 CSTF1_dimer WD40_WDHD1_1st WDR55 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_TEP1_C WD40_RFWD3 Ge1_WD40 Beta-prop_EIPR1 Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_NUP159_NUP214 Beta-prop_NOL10_N Beta-prop_IFT122_1st Beta-prop_VPS8 Beta-prop_WDR75_2nd PROPPIN Beta-prop_NWD2_C Beta-prop_SPT8 Cytochrom_D1 Beta-prop_WDR11_1st Beta-prop_WDR19_2nd
Other DBs
NCBI-GeneID: 105834601
NCBI-ProteinID: XP_012532678
LinkDB
Position
9:21633827..21635858
AA seq 437 aa
MKEPEADPKNVIKSRELLYRLMISQLFYDGHQTLAVQLSNMIQAEPPCPPSDRLLHLMLI
GTAHEPDRSKKDNSTSLSTFASSFDNTLGPGLDLEFETETQTQAPEPAQYETAYVTSHKG
NCRAGAFSSDGQLIATGSVDASIKILDVDRMLAKSAPEEIAPGDQTGGHPVIRTLYDHLE
EVTCLEFHPREPILVSGSRDFSVKLFDFSKASVKKAFRTITDADQIRCLSFHPTGDFLIV
GTNHPIVRLYDVNTAQCFVCSIPSHQHTAGITSIKYSPDAKTYASAGKDGSIKLWDGVSN
RCVNTFAKAHDGYEVCSVIFTRNGKYLLSSGKDSLIKLWELSTSRCLIAYTGAGTTGKQE
HKAQAIFNHTEDYVMFPDEATTSLCAWNSRNASRKQLLSLGHNGPVRMIVHSPTAPAFLT
CSDDFRARFWFRRMPTH
NT seq 1314 nt   +upstreamnt  +downstreamnt
atgaaggaacccgaggcagatccgaagaacgtcatcaagagcagagagctgctctacaga
ttgatgatcagtcagctgttctacgatggtcatcagacactagccgtacagttatccaat
atgatacaggcggaacctccgtgtccaccctcggatcggctgcttcatctgatgttaatt
ggcactgctcacgagccagatcgttccaagaaggataacagcactagcttgtctacattt
gcatcaagtttcgataacactctaggtcctggattagatctagaatttgagacggaaact
cagacacaagcaccagaaccagcgcaatatgaaacggcgtatgtcacgtcccacaaagga
aactgcagagctggagctttctcgtcagatggtcagttgatagctaccggctctgtagat
gcctcgatcaagatcctagatgtggacagaatgctagctaagtctgcaccagaagagatc
gcgcccggagatcagacaggaggtcatccagttataagaactttatacgatcacttagag
gaagtgacatgtttggagtttcatcccagggagcctatacttgtgtctggtagtcgcgac
ttctctgtaaagttgtttgactttagtaaagccagcgtcaagaaggcgtttagaaccatc
acggacgcggatcaaattcgatgtctgtctttccatccaaccggagattttctcatagtc
gggactaatcatccaatagttagattgtacgacgtaaacaccgcacaatgcttcgtgtgc
agcataccgagtcaccaacatacagccgggataacgagtatcaagtactcgccagacgcg
aagacttacgcatcggcgggaaaagatggtagcattaaactttgggatggtgtgtctaat
cgatgtgtgaacacctttgcaaaagcgcatgacggttatgaagtatgctcggttattttc
acaaggaatggcaagtatttactgtcctcagggaaagattccttgataaagttatgggaa
ttatctactagcagatgtctaatagcatatacaggtgctggaactacaggtaaacaggaa
cacaaggcacaggctatctttaatcatactgaggattatgtgatgtttcctgacgaagca
actacttcattatgcgcttggaactctcgaaacgcatcgagaaagcaactactgtctcta
ggtcacaacggtcccgtgaggatgatcgtgcattcgccgacagctcctgcatttttgaca
tgtagcgatgatttcagggcaagattttggtttcgaagaatgccaacgcactaa

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