Monomorium pharaonis (pharaoh ant): 105836839
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Entry
105836839 CDS
T05760
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mpha
Monomorium pharaonis (pharaoh ant)
Pathway
mpha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105836839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpha03019
]
105836839
Messenger RNA biogenesis [BR:
mpha03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105836839
mRNA degradation factors
5'-3' decay
Decapping complex
105836839
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PLATZ
Motif
Other DBs
NCBI-GeneID:
105836839
NCBI-ProteinID:
XP_036139593
LinkDB
All DBs
Position
3:<3962136..3969447
Genome browser
AA seq
725 aa
AA seq
DB search
MADTFFGFDTTLGENNLEDGLDCPLEEDELEEEEYDALNDETFGPDAAIGDWEEDHEKLA
EITESNRLHNQSASSKKTISNINIEDNLSHLVLDKEGIVPRPGVWGSPLNLSPPKAQPRL
SLPNACTVEELERGLIANRPPPGLSKPQTQQQQKKSEGSILFENLSLNEKLHVNGLPPSR
FPPGFAPGAHPIILPNPIRPPHHPQLMQHPRLLGLINQAGNVLRYPPPPHLMLPQPVPRQ
TLHGSYGFPPQLHPNLGGPPFLRPDHMMPAFPNNQTNHQQHQHSYSHLGNQRNQNRSYYH
NEQQAGHQSFFKNNQYPHRNHDRNNQRSYHHQHYSHSVNGNVSGEYEHSGKLAIKPHEKQ
WLINIQLLQLNTIQPYVDDHYYVVFCDKRNKQHADQEQKDKKHNNNGYHRDHRDWELTPQ
ATSRSAYTPAQFENSLGKLHCSSVTAPRKLIDMDVVSNSDSQSTPQSQQKDTKKTRQLLL
EIERLFTLLFKLEDLSNPLASIPEPQQQQEGESEVNAAKTEPELISMILTCLQQLIQEDK
LASMLSIRKGKTLLLRFLPHLNVTEYNKQLRELWTAIFKGLAMIGRRDCHILTDFYSEFR
KWLEVVKDFDTILRLVRALSDSANVHPVKNNSLTFALMNKFGVSAVAAMIEQAEQLCDTD
ESLPFEWSTFVLTIVELIGDASPCVAPCQPITANTLNKHLKRISNLKLERYTALACLLTD
ANPLR
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggcagacacttttttcggtttcgataccacgctcggcgagaacaatctagaggatgga
ttggattgtccgttagaggaagatgagcttgaagaagaagagtatgatgctcttaatgat
gagacgtttggtcccgatgctgccatcggtgattgggaggaagatcatgagaaacttgct
gaaattactgaatcaaatcgccttcataatcagagtgcatccagtaaaaagactatttct
aatataaatatcgaagataatttatcacatttggtattggataaggaaggaatagtcccc
cgacctggtgtatggggtagtcctttgaatttatctcctccaaaagctcagccacgatta
tctttaccaaatgcttgtacagtggaagagttggaaagaggacttattgcaaataggcca
ccaccaggtctcagtaaaccacaaacgcaacaacagcagaagaaatctgaaggttccatt
ctgtttgagaacctctctttgaacgagaaacttcatgttaatggcctacctccatcgcgt
tttccaccagggtttgctcctggagcacatcctataattttacccaatcccataagacca
ccacaccatcctcaattgatgcaacatcctagattattaggtttaattaatcaagctggt
aatgtgttacgttatcctccaccaccacatttaatgttgccacaaccagttccaaggcaa
actcttcatggctcttatggctttcctcctcaactacatcctaatttaggaggcccacca
ttccttcggccagaccacatgatgcctgcatttcctaacaaccaaaccaatcatcagcaa
catcaacattcttattcacatttaggaaatcagagaaaccagaacagatcttactatcat
aacgaacaacaagccggacatcaatcattttttaaaaataatcaatatcctcatcgtaat
catgatagaaacaatcaaagatcttatcatcatcaacattattctcacagtgttaatggt
aatgtctcgggagaatacgaacactcaggaaaactcgctataaagcctcatgagaagcaa
tggttaattaatattcaattattacaacttaatacaattcaaccatatgttgatgaccat
tattatgtcgtattctgtgataaacggaataaacaacatgcagatcaagaacaaaaagat
aagaaacacaataataatggataccacagggatcatagagattgggaattaacacctcaa
gctacttcaagatcagcatacacgccagctcaatttgagaattcattaggcaaactccat
tgcagcagtgtaacagcaccacgtaaacttatcgatatggatgttgtatcaaatagcgat
tctcagtcaactcctcaatcccaacagaaggacactaaaaaaacgcgacaattactcctt
gaaattgagagactgtttacattgctatttaaattggaagatttgagcaatcctctcgct
tcaattccggaaccacaacagcaacaagaaggggaatccgaagtaaacgcggctaaaact
gaaccggaattaataagcatgattttaacatgtttacaacaattaatacaagaagataaa
ttagctagtatgctaagtattcgtaaaggcaagacattactactgcgttttttacctcat
ctgaacgtgacagaatataataagcaattaagagaattgtggactgcgatatttaaagga
ttagctatgataggacgtagagattgtcatatattgacagacttttattccgaatttcga
aaatggcttgaagttgtgaaagattttgataccatattgcgattagtaagagcattatct
gactctgctaatgttcatcctgttaaaaataatagcttaacttttgctcttatgaataag
tttggtgtgtctgcggtagcagcaatgattgagcaagctgaacaattgtgcgacacagac
gagtccctgccttttgaatggtcaacttttgtattgacaatagttgaactaattggtgac
gcatcaccatgtgttgcaccctgtcaaccaattactgcaaatacgctcaataaacatctg
aaacggatttccaatttaaaactagaaaggtatacagcgctcgcgtgtttgttaactgat
gccaatcctttacgatag
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