Monomorium pharaonis (pharaoh ant): 105836874
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Entry
105836874 CDS
T05760
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mpha
Monomorium pharaonis (pharaoh ant)
Pathway
mpha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105836874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpha03019
]
105836874
Enzymes [BR:
mpha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105836874
Messenger RNA biogenesis [BR:
mpha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105836874
mRNA degradation factors
3'-5' decay
Ski complex
105836874
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MTR4_beta-barrel
ATPase_2
nSTAND3
DUF3067
Motif
Other DBs
NCBI-GeneID:
105836874
NCBI-ProteinID:
XP_012536662
LinkDB
All DBs
Position
7:8585828..8591729
Genome browser
AA seq
1211 aa
AA seq
DB search
MTESIQLAAGPPPIWPDIKSELREYIECPERLPIHQLDNTQCYWARKADVVSLLEFDLTP
VSTTLKFDRDPITGKIGEIQEINLQGAGETARNSMSMIRAPGSLADGVRGNPSNIPFWPG
GFEEPKVPKNEIVGDIDFEKDLRTLAKGFSSGLEFKSDNCTPINCTRNETEDSVPEEIEN
LIISNNNVNLMAVIHEEGNLLGSWSSVEEPKKETVLQVADNNIPFVDNSVSSKDTNIPIL
KISEKKAELTKTEWAEQLDVSEPVTDFDKKVPDPAITFNYELDTFQKQAILKLEENSNVF
VAAHTSAGKTTVAEYAIALSQKHMTRVIYTSPIKALSNQKYRDFKRKFESVGLLTGDFQI
NQTASCLIMTTEILQSMLYCASDVLRDLEFVIFDEVHYINNEDRGHVWEEIVILLPQNIN
IVMLSATVPNPIIFADWVGRIKKRKMYVISTLKRPIPLLHYLYTGTDGKTKDDKFLVLDS
NRQFLLDGWYKATNASDKKKDKIPKDSRRRIQMTPKQEEVLWRAFISHLQNNDMLPVVVF
TLSRKRCDMNAATLRNLDLTTAREKHQVHVFFQSNIKHLKGSDRELPQVLMMQELLIKGV
GIHHSGILPILREIVEMLFQNGVVKLLFATETFAMGVNMPARTVVFDSIRKYDGNNFRTL
YPTEYIQMAGRAGRRGHDTTGTVIVMCRNDVPHFNDLKPMMCGEPQTLESKFKVTYSMLL
NLRRVNESVTVEAMMRKSFKESPLASQEATYNNELRKIERELSSLPPLTEIQKKLSTFYD
EAIDYLEDVKFLNPYLLESKKAVKGLTEGRVLLISYENHYKKLALLLQIIHHKNSTQYKV
LILKDTNTSTSEVAEFKSPQIFEKWCEIIGLTRKEIFVPSINPSHEIVTLFPWHILKITN
CQIKVDCSLVLNDWEKRQISRFKNDPPGQTCQTAVQELTSLSFNASSNPQVLRPYIEPSS
KTDFQLRIQHRDKLKASLDNMKCTEIPNFEEQFRPVFERNQLEDKKRQLQLKLSDEGMVL
YPEYMNMVALLKHFKYIDNDERVALKGRVALQMGSNELLITELILKNVLTVLQPAEIAAL
LSALIFQQRTEFEPKLTPTLTNACNVMNEVHAELEHLEQYYQLSTLQPLNFGLVEVVYEW
AQAKSFAEIMKMTDVQEGIIVRCIQQLGETLRDVKNAAVTIGDPVLKEKMEEASTAIKRD
IVFAASLYTQD
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgactgaatcaatacagttagctgctgggcctccacctatttggcctgatatcaagtca
gaactgcgagaatatatagaatgccctgaacgattacctatacatcaactagacaatacc
caatgttattgggcgcgtaaagctgatgttgtttcgttgttggaattcgatttgactcca
gtcagtaccacactaaaattcgaccgtgatccaataacaggcaagattggcgagatacaa
gaaatcaatttacaaggtgcaggggaaactgcaaggaattctatgtctatgatccgcgca
cctgggtcacttgcagatggagttcgaggcaatccgagtaatattccattttggcctggc
ggttttgaagaacctaaagtgcctaaaaatgaaattgttggcgacattgattttgagaaa
gatttaaggacattagccaaaggattcagctcaggattagaatttaaaagtgacaattgc
acgccgatcaactgcacaaggaacgagacagaagattcagtacctgaagaaattgaaaac
ttgataatcagtaacaataatgtaaatttaatggctgtcatacacgaggagggaaatttg
cttggctcatggtcttcagttgaggaaccaaaaaaggagaccgttcttcaagttgcggac
aataacattccctttgtagacaattctgtttcatccaaggatacaaatataccaatctta
aaaatatctgaaaaaaaagcggaacttacaaagacagaatgggcggaacagctggacgta
tccgagccagtgactgactttgataaaaaagtacctgacccagcgatcacattcaattat
gaactggacacttttcagaagcaagctattctcaaattagaagagaacagcaatgtcttt
gttgctgcgcatacatcagcaggaaagaccactgttgccgaatatgccattgcattaagt
caaaagcacatgacgagagtgatttatacatcccccataaaagcactgtcaaatcagaaa
tatcgtgattttaaaagaaagtttgaaagcgttggattgttaacaggcgattttcagata
aatcagactgcttcttgtctaatcatgacaacagagatcttacaatcaatgttgtattgc
gcgtctgatgtcttgcgagatctggaatttgttatatttgatgaagtgcattatataaat
aatgaagataggggtcacgtatgggaggaaatagtcattcttttaccgcagaatattaat
atagtaatgttatctgcgaccgtaccgaacccaataatattcgcggattgggtcggtcga
atcaaaaaacgaaaaatgtatgtgatcagcactttgaaaagaccaatacctcttttgcat
tacttgtacaccggcactgatggtaaaaccaaagatgacaaattcttagttcttgatagc
aatcgccagtttttattagatggatggtataaagcgacaaatgcgtccgataaaaagaaa
gacaaaatcccaaaagactcaagaagaagaattcagatgacgccgaaacaagaagaagta
ttatggagagcgtttataagccatcttcagaacaatgatatgttacccgttgttgtattt
actctgtcgagaaaacgttgtgatatgaatgctgcaacgttaagaaatctcgatttaaca
actgcgagagagaagcatcaagtacacgtatttttccaatctaatataaaacacctgaag
ggcagcgatagagaattaccgcaagtgcttatgatgcaagaactcctgataaaaggcgtg
ggtatacatcatagtgggatactaccaattttaagagagatcgtagaaatgttatttcaa
aatggagttgtaaagttactattcgcaacggaaacttttgccatgggagttaacatgccg
gcgcgcacggtggtttttgattccattcgaaaatacgacgggaataactttcgtaccctg
tatccgactgaatacatacagatggccggtcgcgccggacggcgaggtcatgacaccaca
ggtactgtcatagtaatgtgcagaaacgacgtcccacactttaacgacttaaagcctatg
atgtgcggtgaaccgcagacattagaatcgaaattcaaagtcacgtattcaatgcttctg
aatttaagaagggtaaacgaatccgttaccgttgaagcgatgatgcgcaaatctttcaag
gagtcgccgttggcttcgcaagaggcgacatataacaatgagttacggaaaatcgaacgc
gaactgtcgagtctgccgcctctgaccgaaatacaaaagaaactctccacgttttatgat
gaagcgatcgactatctggaagatgttaaattcctgaatccctatttgctcgagtcaaag
aaggcagtgaaaggtttgaccgagggcagagtcctgttaatatcgtacgagaatcattac
aaaaaactagcactcttactgcaaattatacatcataagaactccactcagtacaaagtc
ttgatactcaaagacacgaatacatcaacctccgaagttgccgaatttaaaagtcctcag
atattcgagaaatggtgtgagattatcggtttaacgagaaaagaaatattcgttcccagt
attaatccgtcgcacgaaattgtgactctgttcccatggcatatattgaagataactaat
tgccagataaaagttgactgctctttggtattaaacgattgggaaaaaaggcaaatttca
cgattcaaaaacgacccaccaggacaaacgtgtcagacagcagttcaagaattgacctct
ctatcatttaacgcttctagtaaccctcaagttctacgaccgtacatcgagccctcgtca
aagactgattttcaactgagaatacaacatagagataaattaaaagctagtctggacaac
atgaagtgcacggaaataccaaactttgaagaacaatttagacctgtatttgaacgaaat
cagcttgaggataaaaagcgacagctgcaactgaaacttagcgacgagggaatggtactg
tatccggaatacatgaatatggtagcgctcctcaaacattttaaatacatagataatgat
gaaagagtcgctctgaaaggaagagtcgcgctacaaatgggtagtaacgaactgctgata
acagaactgattcttaaaaacgtattaacggtcttgcaaccagcggaaatagcggcatta
ctgtcggcactgatcttccagcaacgcacagaattcgagcctaaactcacaccaaccctt
actaacgcctgcaacgtaatgaacgaagtgcacgcggaactggaacatctcgaacaatac
tatcaactgtcgacattacagccattgaatttcggcttggtggaagttgtctatgaatgg
gcgcaagccaagtcgtttgctgagatcatgaaaatgacagacgtccaagagggaattata
gtccgttgtatacagcaacttggcgaaacgttgcgagatgtcaaaaatgcggctgtgact
ataggcgatccggttttaaaggagaagatggaggaagcctcgaccgcaatcaagcgcgac
atagttttcgccgcgtccttatacacgcaagactga
DBGET
integrated database retrieval system
