Monomorium pharaonis (pharaoh ant): 105836935
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Entry
105836935 CDS
T05760
Name
(RefSeq) probable cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
mpha
Monomorium pharaonis (pharaoh ant)
Pathway
mpha03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mpha00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105836935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpha03019
]
105836935
Messenger RNA biogenesis [BR:
mpha03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105836935
U7-dependent histone pre-mRNA processing factors
105836935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
105836935
NCBI-ProteinID:
XP_012536785
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Position
2:complement(31451601..31455749)
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AA seq
737 aa
AA seq
DB search
MTSIIKLHAISGAMNESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVHQIDAVLL
SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDIYQSRHNMEDFDLFTLDDVD
AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK
ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA
GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN
NPFQFKHLQLCHSMAELNQVPSPKVVLASTPDMECGFSRELFLQWCTNPQNSIILTSRTS
PGTLGRDLVEKGGNRNITLDVKRRVKLEGIELEEYQKREKLKQEQLKQEQMETADVSSES
EDEIEVGGGRGKHDLLVKQESKPGFFKQSKKQHPMFPFVEEKIKIDEYGEIIKPEDYKIA
ETVPEVEDNKENIEMKQEETNYHPEVAMDIPTKCVQVSRTMTVNAAITYIDFEGRSDGES
LQKILAQLRPRRVVLVRGSPKDTEILAQQAQSTGARVFVPGRGETLDATTETHIYQVRLT
DALVSGLNFSKGKGDSEVAWIDAMITARDQICRDAIADTESENAIDESDKILTLEPLPLN
EVPGHQTTFINELKLSDFKQILNKSNIPSEFSGGVLWCCNNTIAVRRHEAGKVILEGCLS
EEYYKVRELLYEQYAIV
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgacatctattataaagcttcacgctatctccggagcgatgaacgaatctccaccttgc
tacatattacaagtggatgaactgaggatattgttagactgcggatgggatgaaaatttc
gatcaagactttataaaagaattaaagagacacgtacatcaaatagatgcggtattactt
tcgtatccagatcctttgcacttaggtgcattaccatatttagtaggtaaatgtggctta
aattgtcctatatatgctactatacctgtctacaaaatgggtcaaatgtttatgtatgat
atataccagtcccgtcacaatatggaagattttgatctttttactttggatgatgttgat
gctgcatttgataaaattgttcagctgaaatacaatcaaagcatatcaatgaaaggtaaa
gggtacggtgtcacattgacacccttaccagcaggacacatgattggggggacaatttgg
aagattgtaaaagtcggagaagaggatataatatatgctgtggactttaatcataagaag
gaacgtcacttgaatggttgtgaattggaaagactgcaaaggccatcgttattgataaca
gatgcgttcaatgctacgtatcaacaagccagacgaagaacgagggatgagaagttgatg
accaatattctacaaacattgcgaggaggtggaaatgtattggtcagcgtagacacagct
ggtcgtgtattagaattggcacacatgttggatcagctgtggcgtaacaaggaatccgga
ttactcgcctattcgctagctcttctcaacaacgttagctacaatgtcgtggaatttgca
aaatcgcaaattgagtggatgagtgataaattaatgagaagctttgaaggtgcgcgcaac
aatccgtttcagtttaaacacttgcaactttgtcacagtatggctgaattgaatcaagtt
ccgagtccaaaggtagttcttgcaagcactcccgacatggaatgtggattttcccgagaa
ttatttcttcaatggtgcactaatccacaaaacagtattatattaacgagtagaacatct
cctggtacactcggcagagacttggtagaaaagggtggtaatcgaaatattactttagat
gtaaagagacgagtgaaactggaaggtattgagttggaggagtatcagaaaagagagaag
ctgaagcaagagcagttgaaacaggaacagatggaaactgcagatgtgagttccgagtcg
gaagacgagatagaagttggtggtggcagaggaaagcatgatttattggtgaaacaagaa
agtaaacctggcttttttaaacaaagcaagaagcagcatcccatgtttccatttgtggag
gaaaagattaaaattgatgaatacggagaaatcataaaaccagaagattataagatagca
gagactgtgcccgaagtagaagataataaggagaacatagaaatgaagcaagaagagacc
aattatcatccggaagtagctatggatattccaacgaaatgtgtacaagtttcgcgcaca
atgactgttaacgcagcgataacatatatagactttgagggtagatccgatggcgaatct
ctacagaaaattttagcgcaactgaggccgagaagagttgttttggtcagaggttcgcct
aaagatacagagatattagcgcagcaagcacaaagtactggtgcaagagtatttgttcca
ggcagaggagagacgttggatgctacgacagagacacatatttatcaagtacgtttaact
gatgctctcgtgagtggactgaatttctcgaagggtaaaggcgattccgaggtagcgtgg
atagacgcgatgataacggcacgtgatcaaatttgtcgagatgctattgctgataccgaa
tccgagaacgctattgacgaaagtgacaaaatactgactttggaacctttaccattaaac
gaggttcccggtcatcagacaacattcataaatgaattaaaactatcggattttaaacag
attttgaacaaaagtaacattccatcagaatttagtggaggagtactgtggtgttgcaat
aacaccatcgctgttagaaggcatgaagctgggaaggtaatattagaaggctgcctttct
gaagaatattataaagtgcgagagctattatatgaacaatatgcaattgtatag
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