Monomorium pharaonis (pharaoh ant): 105837322
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Entry
105837322 CDS
T05760
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K19719
collagen type II alpha
Organism
mpha
Monomorium pharaonis (pharaoh ant)
Pathway
mpha04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
mpha00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105837322
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mpha00536
]
105837322
Glycosaminoglycan binding proteins [BR:
mpha00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105837322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
105837322
NCBI-ProteinID:
XP_012537442
LinkDB
All DBs
Position
2:32675656..32691489
Genome browser
AA seq
1500 aa
AA seq
DB search
MMSRRALELITGLLVVQLLLLLPDHVNAVKTRLRKQRSKPQDHQAQQPGSDYDYNEYYDH
YDEYDEKNETATTSPPSGITRFSGRPEIPAETFLRRGTPTDLPTPTTTQFYNHEETSPTS
EQDHSVSPTEILPGESNIYSSVALPGLRGVPGRPGDAGRPGDTGFPGQPGIPGTPGPPGP
PGPVPDVSLYYQQLALAQANEDKGPTGAAASLYPEAYFQAQVGPMGPRGPPGAPGAPGPQ
GFQGTRGETGELGPPGPPGMPGPRGLPGLPGKDGVNGEDGEAGQPGSPGPPGPRGLPGIP
GLPGIKGHHGFPGLDGSKGEQGASGEKGSIGSPGPMGPVGPMGPAGPRGERGREGPSGPP
GLRGLDGIAGSPGQPGAVGKPGAPGFPGNPGAKGDQGSPGPTGSQGLQGPRGESGRPGQP
GETGPQGLQGKDGIPGDKGATGATGLVGVPGFPGVRGQPGTPGNPGIPGAKGAPGLSGDR
GFKGDPGVKGDPGTPGPRGLPGPSGNEGKRGKRGMRGPPGATGPPGERGTPGSRGLPGLD
GLAGSKGQPGDRGSTGPVGPKGTTGDPGRPGSTGLQGTRGLMGRPGVPGKPGNPGERGIQ
GADGKPGEQGPPGSQGLPGPLGLPGERGYPGERGKDGEPGNPGSPGPRGDVGKEGLPGVQ
GPPGPPGNDGARGLQGSIGPRGFQGLPGAAGNPGVPGKDGEAGVQGPPGPPGLVGNRGER
GLPGERGLVGPPGPMGPRGETGTPGADGLLGLPGLKGDKGSFGSPGLLGLPGARGLPGEP
GQKGERGISGSIGPEGPPGHIGERGPQGEVGPPGPPGEPAERGDPGPPGPIGETGASGNP
GERGPLGLQGSQGFPGPQGLIGLPGLKGDRGYPGLKGEQGNSGLPGTRGEVGPPGPIGLT
GAKGLRGESGARGEPGLMGPPGITGHIGPSGPPGNMGPPGAPGLPGVKGDAGDTGRPGNP
GSIGNPGPSGIDGIKGENGSPGSQGPMGPQGPPGLPGERGLSGLPGSPGPIGNRGLRGAP
GEIGPAGKPGAEGPPGPPGLIGPLGPPGHVGEAGPEGPVGKPGPPGIGGRPGDKGPPGAP
GAAGPSGPPGLPGLLGPTGATGPIGERGPKGETGPQGVEGPQGLRGKPGPAGLEGIKGDR
GEEGQKGAKGHRGFTGLQGLPGTPGLAGERGIPGLPGPPGKDGEPGIRGNPGREGNPGPI
GPPGNPGARGPSGEEGRHGLPGPPGLPGPPGPPGDGFGYDAASLVAFLGQGQTKGPDPLN
DEPPRIFSKDITEKERRELLLKAYENLKSSFQKMMKPDGEKNSPAKTCRDLFVAYPDKLS
GEYWIDPNEGDIRDAILVYCDAEKRATCILPNPSRSPDITHITDQQETWLSEIDNGIKIT
YKADSNQIGFLQLLSKHSKQNITYHCKNSVAYFDYERKTYRKGLKLLAWNDVELTPRSNQ
RLRYEMITDECRLHQNHWGKTIISYETDKPVRLPILDVALRDIGNPDQSFSIEIGAACYD
NT seq
4503 nt
NT seq
+upstream
nt +downstream
nt
atgatgagccggcgggctttagagctgatcacaggacttcttgtggtccagctgctactg
ctcttgccggatcacgtaaacgctgtgaagactcggttgaggaaacaaagatccaagcca
caggaccatcaggctcagcagcctggtagcgattatgactataatgagtattacgatcat
tacgacgaatacgacgaaaagaatgagacggcgacaacgtcaccaccatcaggtatcact
cgattttcggggcgacccgaaataccagcagaaacattcttgagacgaggaacacctaca
gatctaccgactccaaccacaactcaattttataatcatgaagagactagtcctacatcc
gaacaggatcattcagtttcacctacggagattttaccgggtgagagtaacatatatagt
tctgtggctctaccaggactacgaggtgtacctggtcgacccggagatgctggccgcccc
ggtgatacaggatttcctggacaacccggtattcctggaactccggggccacctggacca
ccaggtcctgtacctgatgtatctctatattatcaacaattggctctggctcaagcaaat
gaagataagggtccgacaggtgcagcagcatcattgtatccagaggcttactttcaggcg
caagtaggcccaatgggtcctcgaggtcctccaggtgcgcctggtgctcctggtcctcaa
ggtttccaaggtacacgaggtgaaactggtgaactgggtcctccaggtcctcctggcatg
ccaggacctagaggcttaccaggattgcctggaaaagatggtgtcaatggagaagatggt
gaagccggccaaccgggatcacctggtcctccaggaccacgtggtcttccaggaatacct
gggcttccagggataaaaggccatcatggatttcccggtctagatggtagcaaaggtgaa
caaggagcttctggtgaaaaaggatctattgggtcgcctggacctatgggtccagtagga
cctatgggtccagcaggacctcgcggtgaaagaggtagagaaggcccatcaggccctccc
ggattgagaggtctcgacggaattgccggttcgcctgggcaacctggtgctgtaggaaaa
cctggcgcaccaggctttccgggcaatcctggagccaaaggtgatcaaggatcaccagga
ccgacaggaagtcagggtttacaaggtccacgaggcgaaagtggtcgtccaggacaacct
ggtgaaactggcccacaaggtctgcaaggcaaagacggaattcctggtgataaaggagct
actggagcgacaggactcgttggtgtacctgggtttccaggtgttcgaggtcaacccgga
acaccgggtaatcctggcattcctggcgctaaaggagcacccggcctttcaggtgataga
ggttttaaaggggatcctggagtgaaaggtgatcctggaacgcctggtcctcgtgggctt
ccgggaccttctgggaatgaaggtaaaagaggtaagagaggtatgcgtggaccacctggc
gctacgggacctcctggagaacgtggcacacctggatcacgtggtcttcctggcttagat
ggtcttgctggatctaaaggacaacctggtgatcgtggttctacgggacctgttggaccg
aaaggcactactggagatcctggacgacctggatcgacaggattacaaggtacacgtggt
ttaatgggtagacctggagttcccgggaaaccaggtaatcctggggaacgtggaattcaa
ggtgcagatggaaaacctggagaacagggaccacctgggtcgcagggtttaccaggacca
ttaggattaccaggggaaagaggatatcctggagaacgcggaaaagatggtgaacctgga
aatccaggctctcctggtccaagaggagatgttggtaaagaaggacttcctggagtgcaa
ggtccaccaggtccaccaggaaatgacggcgcgcgaggtcttcagggatctatcggtcct
agaggttttcaaggtcttccaggtgcggctggaaatccgggtgttcctggcaaagatgga
gaagcgggagtacaaggacctccgggtccgccaggattagtcggtaacagaggcgagcga
ggacttccgggagaaagaggactcgtaggacctccaggacctatgggtcccagaggagaa
accggaacaccgggcgctgatggcctccttggtttaccaggacttaaaggagataaagga
agttttggctcaccgggattactaggacttcctggtgcgagaggattacctggagaacct
ggtcaaaaaggagaaagaggcatatctggatcaatcggtcctgaaggaccacccggacat
attggagaacgtggtccacaaggagaagttggacctcctggtcctcctggagaaccagca
gaacgaggtgatccaggtcctcctgggcctattggtgagactggagcttccggtaatccg
ggagaaagaggacctcttggattgcaaggctcgcaaggttttccaggtccacaaggatta
attggacttcctggtttgaaaggcgatcgcggatatccagggttaaaaggagaacaagga
aattcgggactacctggcactcgcggcgaggtcggaccacctggacctattggacttacc
ggtgctaagggacttagaggtgaatctggtgcacgaggcgaacccggtttaatgggacca
cctggtatcacgggacatattggaccatcgggtccaccaggaaacatgggaccacctggt
gctcctggcttgcctggtgtcaaaggcgacgcaggcgataccggacgtcctggaaatcct
ggttcaatcggtaaccctggtccatctggaatagatggaattaaaggtgaaaatggctcc
ccaggctctcaaggcccgatgggtcctcaaggacctccaggtttacctggtgagagaggt
ttatcaggattacctggttctcctggccctataggaaatagaggattacgtggagcacct
ggtgagataggacctgctggaaaaccaggcgcggaaggtcccccaggaccccctggatta
ataggccctctcggtcctcctggtcacgtgggagaagcaggaccagaaggaccagttgga
aaaccaggaccaccgggcataggaggccgaccaggcgacaagggaccacctggagctcct
ggtgctgcaggaccatcaggtcctcctggattaccagggctacttggacctactggagct
accgggcccattggagaacgtggcccgaaaggtgaaacgggcccgcaaggtgtggaaggt
ccacagggactacgaggaaaacctggtccggcaggtcttgaaggaataaagggggatcgc
ggagaggaaggacagaaaggggctaagggacatcggggatttactggtttacaaggatta
cccggcactcctggtctagcaggagaaaggggtatacctggtttgccaggaccgcccggt
aaagatggagaaccaggtattagaggtaatcctggacgggaaggtaatccaggacctatt
ggacctccgggaaatcccggagcaagaggtccatctggggaagaaggtcgtcatggatta
ccaggacctccaggacttcctggaccacctggtcctcctggggatgggtttggttacgat
gctgcgtctctagtagcatttttaggacaaggccaaactaaaggaccagatccgcttaat
gatgaaccaccaagaatatttagcaaagatattactgaaaaagaacgaagagagttactt
ttaaaagcgtatgaaaatctaaaatcatcgttccaaaaaatgatgaagccggatggtgaa
aaaaattcgcccgctaaaacgtgtcgagatctatttgttgcctacccagacaaattatct
ggcgaatactggattgatccaaacgaaggagatattcgagacgcaatcttggtgtattgc
gatgctgaaaaacgagcaacttgtattttaccaaatccatcgcgttcaccagatatcact
cacatcactgatcaacaagaaacctggctgagcgaaatagacaacggcataaagattaca
tacaaggcggacagtaatcaaattggtttcttgcaattgctctcgaaacattcgaaacag
aatattacgtatcattgcaaaaatagtgtggcctacttcgattatgaaagaaaaacgtac
agaaaaggcttgaaacttttggcttggaatgatgttgaattgacaccacgaagcaatcaa
cgtctcagatatgagatgataacggatgaatgcaggctccatcaaaaccattggggtaaa
actattatctcatacgaaacggacaaacctgtaagacttcctatcttagacgtggcttta
cgagatattgggaacccagatcaaagtttttctattgagattggtgcagcttgttatgat
taa
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