Monomorium pharaonis (pharaoh ant): 105838271
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Entry
105838271 CDS
T05760
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mpha
Monomorium pharaonis (pharaoh ant)
Pathway
mpha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105838271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpha03019
]
105838271
03041 Spliceosome [BR:
mpha03041
]
105838271
03009 Ribosome biogenesis [BR:
mpha03009
]
105838271
03016 Transfer RNA biogenesis [BR:
mpha03016
]
105838271
Enzymes [BR:
mpha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105838271
Messenger RNA biogenesis [BR:
mpha03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105838271
Spliceosome [BR:
mpha03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105838271
Complex C
U4/U6.U5 tri-SnRNP related factors
105838271
Ribosome biogenesis [BR:
mpha03009
]
Eukaryotic type
Pre-60S particles
Helicases
105838271
Transfer RNA biogenesis [BR:
mpha03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105838271
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Death_3
Motif
Other DBs
NCBI-GeneID:
105838271
NCBI-ProteinID:
XP_012539162
LinkDB
All DBs
Position
Unknown
AA seq
1009 aa
AA seq
DB search
MANFTEDLFDVFDEQGDDTEIPDISKKSESESGIKRQLDTDNDKPAVKKLRQESVVDDIN
IEEIVCRIKVHTVDTIESCMHEIAIPPDQEYVPLEQKQSKPAKEYKFILDPFQKEAILCI
ENNQSVLVSAHTSAGKTVVAEYAIACSLKDKQRVIYTTPIKALSNQKYREFHEEFKDVGL
VTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVWEETLI
LLPDNVHYVFLSATIPNARQFAEWVAHLHKQPCHVVSTDYRPTPLQHYVFPVCGDGIHLV
VDETGQFKEENFNRAMACLQNMGDAAKGDTKGRKGGLRATNSGQTNIFKMVKMIMERNFA
PVIIFSFSKKDCEVYAMQMAQLDLNTLEEKKLVDEVFNNAVDVLNDEDKKLPQVMNLLPL
LRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLFTAARKFDGK
DFRWITSGEYIQMSGRAGRRGLDDKGIVILMIDEQVSPVIGKAIVQGKPDPINSAFHLTY
NMVLNLLRVEEINPEYMLERSFFQFQNQAGIPVLYNKVKELCSAYNTVNVDRYDEISTYH
DIREQLNRLSAEFQSFLTKPEYLVPFLQPGRLVKVKNGNETFDWGIIVNFKKKNPKNPVK
GVTVIVIDILLHLSKESKEGNPIPCRDGEEGEIEVVPVLHNLISQISSLRLYYPKDLRPP
DNRKSVLKTIREVKKRFPDGPPLLNPITDMHIEAQAFKDIVKKIEALEKRLYAHSLHKDP
NVNVLYEQFLHKEELAAQLKQAKEEFKQAKSILQMDELKCRKRVLRRMAYCTSADVIELK
GRVACELNGADELLMTEMIFNGLFNSLSVPQMVALISCFVCDEKSNEMPKSTEELSGPLR
QMQDLARRIAKVSTEANLELDEDAYVDRFKPYLMDVIYAWCKGATFLQICKMTDIFEGSI
IRCMRRLEEVLRQLCQAAKGIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattttaccgaagatttgtttgacgtctttgatgaacagggcgacgatacagaa
ataccagatatttcgaagaaaagcgagtcagaatcgggaataaagcgacagcttgacaca
gacaatgacaagccagctgttaaaaaattacgacaggaatctgtcgtagatgatatcaat
atagaagaaatagtatgtcgtataaaagtacatactgtagatactatagaatcttgtatg
cacgagatagctattcctcccgatcaagagtatgtaccattagagcaaaagcaaagcaaa
cctgctaaagaatataaatttatacttgatccatttcaaaaggaggcaattttatgtatt
gagaacaatcagtcggttcttgtttctgcacatacatcagctggcaaaactgttgtggct
gaatatgcaatagcatgttcacttaaggacaagcagagagtaatatacactactccaatc
aaagcattaagtaatcagaagtatagagaattccacgaagaatttaaggatgttggttta
gtaacgggcgatgttactataaatccaacagcaagtgtattaattatgactactgaaatt
ttgcgaaatatgctctatagaggttcagaggtaatgcgtgaggtcggatgggtgattttt
gacgagattcattacatgcgtgataaagagagaggtgtggtttgggaggagacacttata
ttgctaccagacaatgtgcattatgtatttctttctgctactataccaaacgcgcgacaa
tttgcggaatgggtggcacatttacacaaacaaccctgccatgtagtttctacggactat
aggcctactccattacaacattatgtatttccagtttgtggcgatggtatacatttggtt
gtagacgagacgggtcaattcaaagaggaaaatttcaacagagccatggcgtgtctgcag
aacatgggcgacgcagctaaaggtgacacgaaaggacgcaagggtggtctacgtgccaca
aacagtggacaaaccaacatctttaaaatggtgaaaatgatcatggagaggaacttcgca
cccgtaataattttcagcttttcaaagaaggactgtgaagtttatgcgatgcaaatggct
caattggatctaaacacgttagaggagaaaaaactggtagatgaagttttcaacaatgca
gtggacgttctcaacgacgaggacaagaagttgccgcaagtcatgaatttgctgccgctt
ttgcggcgtggaataggaatccatcatggtgggctcttgccgatcttgaaggagacagtc
gagatattgttcggcgagggtttgatcaaagctctcttcgccactgaaacattcgcaatg
ggcttgaacatgccggcacggacggttttgttcacggcggcccgtaaatttgacggcaaa
gactttcgttggatcacgtcaggcgaatacatccagatgtccggtcgcgccggcagaaga
ggtctcgatgacaaaggaatcgtcatattgatgatagacgagcaagttagtcccgtgatt
ggtaaagctatcgttcagggaaagccagacccgattaactctgcatttcacttgacctac
aatatggtccttaatcttctccgagtggaagagattaatccagaatacatgttagagaga
agcttctttcagtttcagaatcaagctggtattccagttttgtacaataaggtaaaggaa
ttatgtagtgcttataacaccgtgaacgtggacagatacgatgagatttctacctatcac
gatatacgtgaacaactcaatcgattgagcgcagagtttcaatcatttctaacaaaacca
gagtatttggttccatttttacagcctggaagattagtaaaagtgaaaaatggaaacgaa
acgttcgattggggcatcatagtgaattttaagaagaaaaatccaaaaaatccagtaaaa
ggcgtgactgttatcgtcattgatattttacttcatttatcgaaagaatctaaagaaggc
aatccaattccatgtcgcgacggcgaagaaggcgagatagaagtagttcctgttttgcac
aatttaatttcacaaattagttcattgagattgtattacccaaaggatcttagaccacct
gataataggaagagtgtcctgaaaacgatacgggaagtgaagaaaagattcccagatggt
ccaccattactcaatcctatcacggatatgcatatagaggctcaagcgtttaaagatatt
gtaaagaaaattgaagcgttagaaaaaagattatacgcacattcattacacaaggacccc
aatgtaaatgtattgtacgagcaatttttgcacaaggaagaattagctgcacaacttaaa
caagccaaagaagagtttaagcaggctaaatcgatacttcagatggatgagctcaaatgt
aggaagcgagttttaagaaggatggcgtattgtacatcggctgacgttatagaattaaaa
ggacgtgtagcttgcgaactaaacggtgccgatgagctgttaatgacagagatgattttt
aatggtctctttaactctttaagcgtaccacaaatggtggcgctgatcagttgtttcgta
tgcgacgaaaaatcaaatgaaatgcccaaaagtacagaagaattaagcggcccacttcgg
cagatgcaagacttggctcgaagaatagcgaaggtctcgacggaggccaatctggaatta
gacgaggacgcatatgtcgatagatttaaaccgtatttaatggatgttatatacgcttgg
tgtaaaggcgcaacattcttacaaatttgtaaaatgacagatatatttgaaggatctatt
atcagatgtatgcgacgtttagaggaggtgcttcgacaattgtgccaagctgcaaaaggt
attggaaatacagatctagaaaataaattcagtgaggcgatcaaactcataaaacgggac
attgtatttgctgcgtccttatatttataa
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