Metamycoplasma phocicerebrale: DMC14_002415
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Entry
DMC14_002415 CDS
T06657
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mphc
Metamycoplasma phocicerebrale
Pathway
mphc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mphc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DMC14_002415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mphc03019
]
DMC14_002415
Messenger RNA biogenesis [BR:
mphc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DMC14_002415
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
AZZ65625
UniProt:
A0A3T0TU53
LinkDB
All DBs
Position
complement(474267..476093)
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AA seq
608 aa
AA seq
DB search
MKPTKIFGLGGMQEIGKSTLIIEYDKHIFIIDTGIKFCDTFVTGINGSIPDFSYLAENQD
RIAGLFITHGHEDHIGGVPYLVQQVDVKRIYAPRIAIQYLKLKFADMKIKTNVEFIEINK
DLKVDFNDCSVDWWTAQHSIPDAFGVRVKTPNGNLMMTGDFRFDYTPIGNLTDFSKLKQI
GDEGLDVLFSDSTNAMRPNHSPSESDILKDIKKYMLEAEKKIIVTAFASNLTRIKAIIEL
GAELNKKVIAFGRSMVDNVDIGRRLGYINAPDEVFIDKKNMSKYNDNELLILTTGSQGEE
MAGLAKMSFGKHPNVTIKPKDTVIFSSSPIPGNRSKCELLVNRLYKLGAIIRENGVDGYL
HTSGHAYKDEHKRIFELTRPKYFIPYHGEYRMSVVHGYTAIESGLEPSNVIVANLGDVYY
LENHKISLADEKVYFGPVFIDGNVLSKTNSQIMKERMELGQNGFVHVIIAINKEKKLILG
KPRIVSRGAFFVKNSLHLIEEAKRLVHGAILYTIKNEKEWTIPQLKQLIIDRLDPFFYKN
KRRNVVIIPTILLADDAKEDTKSKKEDNAKRKNISIKHKSTKQNIRKEQIKKEVNKKRRM
KNSNSIEN
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaacaaaaatttttggtttaggcggaatgcaggaaataggtaagagcacactt
attatagagtacgataaacatatttttattattgatactggaattaagttttgtgatacc
tttgttacaggtattaatggttcaatacctgattttagttatttagctgaaaatcaagat
agaatagctgggttgtttataacacatgggcatgaagaccatattggaggagtaccatat
ttagttcaacaagtagatgttaaaagaatttatgcacctcgtattgcaattcaatactta
aaattgaaatttgctgatatgaaaattaaaacaaatgttgaatttattgaaattaacaaa
gatttaaaagtagattttaatgattgttctgtggattgatgaacagctcaacactctata
ccagatgcttttggtgtaagagtaaaaacaccaaatggaaatttaatgatgactggagat
tttagattcgattacactcctatcggaaatctaacagattttagcaaactaaaacaaata
ggtgatgaaggattagatgttttattttcagattcaactaatgctatgcgtccaaatcac
tctccatcagaaagtgatatattaaaagatattaaaaaatatatgttagaagctgaaaag
aaaattatagttacagcttttgcttctaatttaacaagaataaaagcaataattgaatta
ggagctgaactaaataaaaaagttatagctttcggtagatcaatggttgataatgttgat
attggccgtagattgggatatataaatgctccagatgaagtatttattgataaaaaaaat
atgtcaaaatataatgacaatgagttgcttattttaactactggatctcaaggtgaagaa
atggctggattagctaaaatgtcatttggtaaacatcctaatgtaactattaaaccaaaa
gatacagttatattttcatctagtccaataccgggtaatagatctaaatgtgaattgcta
gttaatagattatataaattaggagcaattataagagaaaatggagtcgatggatatttg
catacttcagggcatgcatataaggatgaacataaaagaattttcgaattaacaagacct
aaatattttattccttatcatggtgaatatagaatgagtgttgttcatggctatactgct
attgaaagtggactagaaccaagcaatgtaattgtagctaatttaggagatgtttattat
ttagaaaatcataaaatttcattagcagatgaaaaagtttattttggaccagtttttatt
gacggaaatgttttatctaaaactaattcacaaattatgaaagaaagaatggaactaggc
caaaatggttttgttcatgtaattatagctataaacaaagagaaaaaattaattcttgga
aaacctagaatagtttcgagaggcgcattttttgtaaaaaattctttacacttaattgag
gaagcaaaacgcttagttcatggagctattttatatacaataaaaaatgaaaaagaatga
actatacctcaattaaaacaattaattattgatagattagacccatttttctataaaaat
aaaagacgtaatgttgttataataccaactatattattggcagacgatgctaaagaagat
accaaatcgaaaaaagaagataatgctaaaagaaaaaatatttcaataaagcataagtct
acaaaacaaaatattagaaaagaacaaattaaaaaagaagtaaataaaaaaagaagaatg
aaaaacagtaattctattgaaaattaa
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