Mangrovibacter phragmitis: MPHASIOC01_001366
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Entry
MPHASIOC01_001366 CDS
T10640
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
mphg Mangrovibacter phragmitis
Brite
KEGG Orthology (KO) [BR:
mphg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mphg03016
]
MPHASIOC01_001366
Enzymes [BR:
mphg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MPHASIOC01_001366
Transfer RNA biogenesis [BR:
mphg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MPHASIOC01_001366
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
Motif
Other DBs
NCBI-ProteinID:
XCE76479
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All DBs
Position
1445927..1447858
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AA seq
643 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
IAVIHTDKDRESAEPEELVEPFLSRFVGRVQKKDDKLSIIPDHPLLRDAIPCRPARQVNH
EFQQGDWAVAEMRRHPLKGDRTFYAELTQFITFGDDHFVPWWVTLARHNLEREAPDGVAT
EQLDEHLNREDLTQLEFVTIDSASTEDMDDALFVQATEGDVLQLTVAIADPTAWIAENSK
LDKIAQVRAFTNYLPGFNIPMLPRELSDDLCSLRPNMPRPVLACRMDILADGAIANIHFF
AATIESKAKLAYDNVSDYLEKQGEWQPDSEAVAQQIGLLAQICQRRSQWRETHALVFKDR
PDYRFILGEKGEVLDIVAEPRRIANRIVEESMIAANLCAAQVLKEKLGFGIYNIHAGFDP
SSVEQLAALLKNHGIEADAQALLTLPGFCTLRRELDSQPSSFLDSRTRRFQSFAEISTEP
GAHFGLGFEAYATWTSPIRKYGDMVNHRLLKAIIKGETVARPADELTIQMAERRRLNRMA
ERDVGDWLYARFLNDKAGTDTQFNAEIIDVSRGGMRVRLVDNGAVAFIPAPFIHAVRDEL
VCSQELGTVQIKGETCYKVTDVIRVTIAEVRMETRNIIARIAG
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggataacccgctgcttgcgcagctaaaacagcaacttcattctcaaaccccg
cgagcagaaggcgtggtcaaagcaactgaaaaaggatttggtttccttgaggttgacgcg
cagaaaagctatttcattccccccccacaaatgaagaaagtgatgcatggcgaccgcatt
atcgccgtcattcacacagacaaggatcgtgaatcggctgaacccgaagagctggttgaa
cctttcctgtctcgctttgtaggccgggtacaaaaaaaagacgataaactgtctattatt
ccggaccatccattactgcgtgatgccattccttgccgccctgcccgccaggtaaatcat
gagttccagcaaggtgactgggctgtcgcagaaatgcgccgtcacccattaaaaggcgat
cgcactttttatgccgagctgactcagtttattactttcggcgatgaccatttcgttccc
tggtgggtgactcttgcacgccataatctggagcgtgaagcacctgatggtgttgccact
gaacagctggatgagcaccttaatcgtgaagatttaacccaactggagtttgtcaccatt
gacagcgccagtacggaagatatggatgatgcgttgtttgttcaggctacagaaggtgat
gtactgcaactgaccgttgctattgcagatccaacagcctggattgctgaaaacagcaaa
ctggataagattgcgcaggttcgcgcctttaccaactacctgcctggcttcaacattccg
atgctgccgcgtgaactgtctgatgacctgtgttcattgcgtccgaatatgccacgtccg
gtactggcttgccgcatggatattctcgctgatggcgccattgcaaacatccatttcttt
gccgcgaccatcgaatctaaagctaagctggcttatgacaatgtttctgattatcttgag
aaacaaggcgagtggcagcctgactctgaagctgtagcacaacaaattggtctgctggct
caaatttgccagcgccgcagtcaatggcgtgaaacccatgctctggtgtttaaagaccgc
ccggattaccgcttcattctgggtgaaaaaggtgaagtgctggatatcgttgctgagccg
cgtcggattgccaaccgcattgttgaggagtccatgattgcagccaacctttgtgctgca
caggtattgaaagaaaaactgggctttggcatttacaacattcatgccggttttgacccg
tcttctgttgaacaactcgcggccttgctcaaaaaccacggtattgaagcagatgctcag
gctttacttaccctgccgggtttctgtaccctgcgccgtgagcttgacagccagccttcc
tctttcctggacagccgtacccgtcgtttccagtcttttgctgaaatcagcactgaaccg
ggggctcactttgggctgggttttgaagcctacgcaacctggacatcaccaattcgtaaa
tatggtgacatggtaaaccaccgtttgctgaaagcgattatcaaaggtgagacggttgct
cgtcctgcagatgaattaaccattcaaatggctgagcgtcgtcgtcttaaccgtatggct
gaacgtgatgttggtgactggctgtatgcacggtttctgaatgacaaagcaggtacagat
actcagtttaatgctgagataattgatgtttcgcgcggggggatgcgtgtacgcctggtt
gataatggcgcagttgcctttatccctgcgccgtttattcatgctgttcgtgatgaactg
gtttgtagccaggaactgggaaccgtgcagatcaaaggtgaaacttgttacaaagtcact
gatgttattcgggttaccattgcagaagtccgtatggaaacacgcaatatcattgcacgt
atcgccgggtga
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