Mangrovibacter phragmitis: MPHASIOC01_002860
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Entry
MPHASIOC01_002860 CDS
T10640
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
mphg Mangrovibacter phragmitis
Brite
KEGG Orthology (KO) [BR:
mphg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mphg03009
]
MPHASIOC01_002860 (srmB)
Enzymes [BR:
mphg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MPHASIOC01_002860 (srmB)
Ribosome biogenesis [BR:
mphg03009
]
Prokaryotic type
rRNA helicases
MPHASIOC01_002860 (srmB)
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Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_11
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
XCE77844
LinkDB
All DBs
Position
2987200..2988552
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AA seq
450 aa
AA seq
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MTVTTFSELELDESLLDALQDKGFTRPTAIQAEAIPPALEGRDILGSAPTGTGKTAAYLL
PVMQHLLDFPRKKSGPPRVLILTPTRELAMQVAEHAKELAAHTKLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVEMLILDEADRMLDMGFAQDIEHISGETRW
RKQTMLFSATLEGQAIKDFAERLLEDPAEVSATPSVRERKKIHQWYYRADNVEHKTALLV
NLLGQPDVTRSIVFVRKRERVHELAGWLRDAGIQTCYLEGEMVQAKRNEAIKRLTDGRVN
VLIATDVAARGIDIPDVSHVFNFDLPRGSDTYLHRIGRTGRAGRKGTAISLVEAHDHLLL
GKIERYIQEPLKSRIIEELRPTTRTPSDKLKGKPSKKVKARREEKKKEQDKTKGRVKQRH
RDTKNVGKRRKPAAAAKQASPEAEGTDKQS
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccactttttccgaactcgaacttgatgaaagcctgctggatgcactccag
gataaaggctttactcgcccgacagctattcaggctgaggcaattcctcctgcactggag
gggcgcgatatcctgggctctgcaccaactggaaccgggaagactgcggcttacttactg
ccggtgatgcaacatctgctcgattttccgcgtaaaaagtccgggcctcctcgggtgttg
atcctcactccgactcgcgagctggctatgcaggttgcagagcatgccaaagagctggct
gcccatacaaagctggatattgccaccattactggcggcgtcgcttacatgaaccacgca
gaagtattcagtgaaaaccaggacattgttgtcgcaacgactggccgcctgctgcaatac
attaaagaagagaatttcgactgtcgcgccgttgaaatgctgattctcgatgaagcagac
cggatgctggatatggggtttgcccaggatattgagcatatatcaggtgaaactcgctgg
cgtaaacaaaccatgttgttttccgccacccttgaagggcaggcgataaaagattttgct
gaacgtttacttgaagacccggccgaagtgtctgccaccccatccgttcgtgagcgtaaa
aaaatacaccagtggtattaccgcgctgacaacgttgagcataaaactgcgttgctggta
aacctgctgggtcagcctgatgttacacgttctattgtttttgtgcgtaagcgtgagcgt
gtgcatgagttagccgggtggctgcgtgatgccggaattcaaacctgttatctcgaggga
gaaatggttcaggctaaacgtaatgaagcaatcaaacgcctgaccgatggccgggttaat
gtgcttattgctacggatgttgccgctcgcggtattgatattcctgatgtcagccatgta
tttaacttcgacttaccgcgagggagcgacacttatcttcaccgcattggcagaaccggc
cgcgccgggcgcaaagggacagctatttcgttagttgaagcgcacgaccatttattgctg
ggcaaaattgagcgttatattcaggagccactcaaatcgcgcattattgaggagctcagg
ccgaccacgcgaaccccgagtgacaaactgaaagggaaaccgtccaaaaaggttaaagct
cgccgtgaagagaagaaaaaagagcaggataaaacaaaagggcgagtgaagcagcgccac
cgtgacaccaaaaatgtgggtaaaaggcgcaagccagccgctgctgctaaacaggcttca
ccggaagcagaaggcactgacaaacagtcataa
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