Mangrovibacter phragmitis: MPHASIOC01_003200
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Entry
MPHASIOC01_003200 CDS
T10640
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mphg Mangrovibacter phragmitis
Brite
KEGG Orthology (KO) [BR:
mphg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mphg03009
]
MPHASIOC01_003200 (rlmD)
Enzymes [BR:
mphg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MPHASIOC01_003200 (rlmD)
Ribosome biogenesis [BR:
mphg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MPHASIOC01_003200 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
PCMT
RrnaAD
MTS
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_23
Cons_hypoth95
Ribosomal_L22
Methyltransf_15
Methyltransf_4
MshEN
CMAS
Motif
Other DBs
NCBI-ProteinID:
XCE73146
LinkDB
All DBs
Position
complement(3323362..3324666)
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AA seq
434 aa
AA seq
DB search
MAQFYSAKRRVATRQSLTVTIDDLDTFGQGVARHNGKALFIPGALPGERVDVTITEDKRQ
YSKGKLLRRLNDSPERVSPVCPHFGVCGGCQQQHASVALQQQSKSRSLARMLKRPVDDVI
TGAPWAYRRRARLSLNFIAKTQSLQMGFRKSASNELVTIQQCPVLVRRLEALLKPLQTCL
QQLQGARYLGHVELVDAENGPVMVLRHIRPLNSQDQEKLEQFSHLHQVTLFLAPESDVLT
RISGDIPWYLSDGLRLSFSPRDFIQVNDQVNQQMVARACEWLAVTPQDRVLDLFCGMGNF
TLPLAKRAAQVVGVEGVLALVEKAQQNALDNGCLNAMFYHENLESDVTRQPWARQGFTKV
LLDPARAGAAVAIPQVIRLAPEKVVYVSCNPATLARDSEALQAAGYQITRLVMLDMFPHT
GHLESMVLFEKAKD
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctgcaaaaagacgcgtggcgacgcgtcaatcactcaccgttact
attgacgacctggacacctttgggcaaggcgtggcacgccacaacggtaaagcactgttt
attcctggcgcattgccgggtgaacgtgttgatgtcaccatcacagaagataaacgccag
tattccaaaggaaaactgttacgcaggctaaatgacagcccggaacgggtttcacccgtc
tgcccccattttggcgtatgtggcggctgccaacaacaacatgcttcagttgcgttgcag
cagcaaagtaaatcacgctctctggcccgcatgttgaaacgcccggtagatgatgtcatt
acaggtgcaccctgggcgtaccgccgccgggcaaggctcagcctgaattttattgccaaa
acgcagtctttacagatgggctttcgcaaaagtgccagtaatgagctggtaaccatacag
caatgcccggttttggtgcgtcgccttgaagcattattaaaaccactgcaaacttgttta
caacaattacagggtgcgcgctatctcggccatgtggaactggtggatgctgaaaatggc
cctgtcatggtgctgcgccacattcgcccgttaaattcgcaagaccaggaaaaactggaa
caattttcgcatttacaccaggtgacactgtttctggcaccggaaagtgacgtattaaca
agaatcagcggtgacatcccctggtatctgtcggacggtctacgcttaagctttagcccg
cgagattttatccaggtgaatgaccaggtgaatcagcagatggtggcacgggcttgcgag
tggctggctgttacaccacaggaccgggttttggacctgttttgtggcatgggaaatttt
accctgccactggcgaaacgcgcggcgcaggttgttggggtggaaggggttctggctttg
gtagaaaaggcgcaacaaaatgcccttgataatggttgcctgaacgccatgttctaccat
gagaacctggaatcggatgttacccggcaaccctgggccaggcagggttttaccaaagta
ttacttgacccggcccgggcgggcgctgctgtggccatacctcaggttatccggctcgcg
ccagaaaaggttgtttatgtatcctgtaacccggcgactctggcgcgtgacagtgaagca
ttacaggccgcgggttaccagataacacggctggtaatgttggacatgttcccgcacact
ggtcacctggaatcgatggtgttgttcgaaaaagcaaaagattga
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