Mangrovibacter phragmitis: MPHASIOC01_003663
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Entry
MPHASIOC01_003663 CDS
T10640
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mphg Mangrovibacter phragmitis
Pathway
mphg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mphg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MPHASIOC01_003663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mphg03019
]
MPHASIOC01_003663
03009 Ribosome biogenesis [BR:
mphg03009
]
MPHASIOC01_003663
Enzymes [BR:
mphg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MPHASIOC01_003663
Messenger RNA biogenesis [BR:
mphg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MPHASIOC01_003663
Ribosome biogenesis [BR:
mphg03009
]
Prokaryotic type
rRNA helicases
MPHASIOC01_003663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
DeaD_C
ResIII
CMS1
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
XCE73560
LinkDB
All DBs
Position
complement(3793730..3795622)
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AA seq
630 aa
AA seq
DB search
MADIETTFSELGLKAPILEALSDLGYEKPSPIQAACIPHLLEGRDVLGMAQTGSGKTAAF
SLPLLNNIDPELRAPQILVLAPTRELAVQVAEACNDFSKHMRGVNVLALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSQLKGLVLDEADEMLRMGFIEDVETIMAEIPAG
HQTALFSATMPEAIRRITRRFMQDPQEVRIQTSITTRPDISQSYWTVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNI
ERTMKLTIPEVELPNAELLGERRLAKFSASVQQQLESSDLDLYRALLSKLQPGEEADMET
LAAALLKMAQGERPLILPPDPVIERRPRREFRDRDDRGDRRGERSERGDRPRRERRDAGE
MELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGDVLQHF
TRTRILNKPMNMQLLGDAQPQPRGERRGGGGRSFGGERREGGRGEGRRFGGGERREGGRP
FNGERRDNRDSRAPRRDRDDSTGRRRFSEA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggctgatattgaaaccaccttttccgaactgggcctgaaagccccaatccttgaagca
ctgagcgacctgggttatgaaaaaccttcgccgattcaggctgcctgcatcccgcactta
ctggaagggcgtgatgttctggggatggcccaaaccgggagtggcaaaaccgcagcgttt
tcgctgccgttactgaacaatattgatcctgagttgcgcgcaccgcaaatcctggttctg
gctccaacgcgtgagctggccgttcaggttgcagaagcgtgcaatgatttttctaaacat
atgcgtggcgtgaatgtcctggccctttatggtggccagcgttatgacgttcagctgcgc
gctttgcgccaggggccacaaatcgttgtgggtacacctggtcgtctgttagaccacctg
aaacgcggcactcttgatctttcccaactgaaaggtctggttctggatgaagcagatgaa
atgctgcgcatgggcttcatcgaagacgttgaaaccatcatggcagaaattcctgcaggt
catcagaccgcactgttttctgcaactatgccagaagcgattcgccgtattacacgtcgt
ttcatgcaagacccgcaggaagtgcggatccagaccagtattactacgcgtcctgatatc
agccagagttactggactgtctatggtatgcgtaaaaacgaagcgctggttcgtttcctg
gaggctgaagactttgatgcggcgattattttcgtgcgtaccaagaatgcgactcttgaa
gtggccgaagccctggaacgcaatggttacaacagtgctgcactgaacggtgatatgaac
caggctctgcgtgaacaaacgctggagcgcctgaaagatggccgcctggacattctgatt
gcaacagacgttgctgcacgcggcctggatgttgaacgtatcagcctggtcgttaactac
gacatcccgatggatgctgagtcttacgttcaccgtattggccgtactggccgtgctggt
cgcgctggccgtgctttgctgtttgttgataaccgtgaacgtcgcctgctgcgtaacatt
gaacgcactatgaagctgaccatcccggaagtggaactgccgaatgctgagttactggga
gagcgccgcctggctaaattctctgccagtgttcagcagcaactggaaagcagtgatctc
gatctgtaccgtgcgctgttaagcaaactgcagccgggtgaagaagctgatatggaaacg
ctggccgcagcattgctgaaaatggctcagggtgagcgtccgctgattctgccgccggat
ccggttattgagcgccgtccgcgtcgtgaattccgtgaccgtgacgatcgtggtgatcgc
cgtggcgagcgtagtgaacgtggtgatcgtccgcgtcgtgaacgccgtgatgctggtgaa
atggaactttaccgtatcgaagtaggccgtgacgatggtgttgaagttcgtcatatcgtt
ggcgcaattgcaaatgaaggcgatatcagcagccgttacatcggtaacattaaactgttt
ggttcacattccaccattgaactgccaaaaggcatgccgggtgacgtattacagcacttt
acccgtacgcgtattctcaacaaaccgatgaatatgcagctattaggtgatgcacagcca
cagccgcgtggtgaacgccgtggtggtggtggtcgtagctttggtggcgaacgccgcgaa
ggtggccgtggtgaaggccgtcgcttcggtggtggtgagcgccgtgaaggtggtcgtcca
tttaacggtgaacgtcgtgataaccgtgacagtcgcgcaccgcgtcgtgaccgtgatgac
tcaacaggtcgacgccgcttcagcgaagcataa
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