Mangrovibacter phragmitis: MPHASIOC01_004195
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Entry
MPHASIOC01_004195 CDS
T10640
Symbol
sbcC
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
mphg Mangrovibacter phragmitis
Brite
KEGG Orthology (KO) [BR:
mphg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mphg03400
]
MPHASIOC01_004195 (sbcC)
DNA repair and recombination proteins [BR:
mphg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MPHASIOC01_004195 (sbcC)
Archaeal homologous recombinant proteins
MPHASIOC01_004195 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
T2SSE
nSTAND3
ABC_tran
cobW
AAA_21
MobB
ABC_ATPase
AAA_22
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
XCE74044
LinkDB
All DBs
Position
4344174..4347332
Genome browser
AA seq
1052 aa
AA seq
DB search
MRILTLRLKNLNSLKGEWKIDFTQSPFNSNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LSTISQSSNDLMTRDTAECLAEVEFEVKGVAWRAFWSQNRARNQPDGKLQAPRVELARCA
DGKIVADKVKDKLETIARLTGLDYDRFTRSMLLSQGQFAAFLNADAKARAELLEELTGTE
IYGQISALIFDTWKQHKQQLEQLQAKASGVQCLTDGERAELENQVSSLVQQEQQLLTQQR
QVQSAVQWLQQLTQQQQQISQLEQKLAQAKRDFEAAEPDRARLALALPAEKLRPVWQTCT
DQMARVHHLEQQLVALSQRLSTAGLVRQQVWLSARNKSTYIQKQRQAITDWLSEHKAVGE
WQHELAGWRSSFARYRDDSKQLTALQQTLTAQQEKLATQAHPALSLTADETVARLAEHQQ
HQAKREQLRRLAFEFAPLQQQYQQLQQQRNEQQQRYQQAGEQLAERRKTWAEVNQQYQDV
ARICELESAIVNLNAERERLQAGQPCPLCGATEHPAVAHYQALKPDENQRRKTELEERKR
LLAEEGATLKGQHDALAAQTEQLTRQQASVEQALEHHQQQWAELCHALNLSAAPGDDITQ
WLSDNDAYQAQLQAHQVWLGQQALVDQTRAQVTELSQSCEQQRLILQTTLATWQLPWPQP
GEVEAWLAAREKHREQFLRQQTLLAQLNTDDEAIRLILRTLEDDGSDTPLPDEETQQQRI
QDWSRHNSEWVALHSQSEALTQQLQQEKEQLAQHQLALDNALQASQFASTEAMTAALLDD
TTRQQLADRLAALAQQVQQQTALAEQAKQQLATHIAARPEHLSEQNTQSELESQLALVNT
QWRENTSGQGALRQQLVHDTRQREQQQSLLHSLEQQQQLVTDWGALNEMIGSKEGDKFRK
FAQGLTLDNLVWLANQQLHRLHGRYLLQRKDNEALELQVVDTWQADAVRDTRTLSGGESF
LVSLALALALSDLVSHKTRIDSLFLDEGFGTLDAETLDTALDALDTLNASGKIIGVISHV
AAMKERIPVQIKVRKVNGLGYSRLDKHFAVDS
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgagaattctgacgctacggttgaaaaacctcaattcactcaaaggtgaatggaaaatc
gactttactcagtcgccgttcaacagcaatggtttatttgccattaccgggccaaccggt
gcaggcaaaaccacattactggatgccatttgcctggcgttatatcaccagacaccacgt
ctcagcaccatttcccagtccagtaacgacctgatgaccagggataccgcagaatgcctt
gctgaagtggagttcgaagtcaaaggcgttgcctggcgagccttctggagccagaaccgg
gcacgcaaccagcccgatggaaaactccaggcgccaagagtggaactggcccgttgtgca
gatggcaaaattgttgccgacaaagtgaaagacaagctggaaaccattgcccgcctgacc
gggctggactatgaccggttcactcgctcaatgttgctctcccaggggcaatttgccgct
tttcttaatgccgatgcaaaagcacgggcagaattgctggaagagctcaccggcaccgag
atttatgggcaaatctccgcactgattttcgacacatggaaacaacacaaacagcaactg
gaacagttacaggctaaagccagcggcgtgcaatgccttacggacggtgaacgggcagag
ctggaaaaccaggtttcctctctggtacagcaggagcagcagttgcttacgcaacaacgc
caggtgcagtctgcagttcagtggttgcaacaattaacgcagcaacagcagcaaatcagc
cagcttgagcaaaaactggcccaggcgaagcgtgattttgaggctgctgaaccagaccgc
gcacgcctggcactcgcgctgcccgccgaaaaattacgccctgtctggcagacatgtaca
gaccagatggcacgggttcaccacctggaacagcaactggttgcgttatcacaacgcctg
agcactgcgggcctggtgcgccagcaggtatggctttcagcccgtaataaatccacttat
atacaaaagcaacgccaggccattactgactggctgagcgaacacaaagccgtgggtgaa
tggcagcacgaactggcaggctggcgcagcagctttgcccgctatcgggatgacagcaaa
caacttacagccttgcagcaaaccctgacggcacagcaagaaaaactggcaacacaggca
cacccggcactctcattaaccgctgacgaaaccgttgcgcgcctggcagaacaccagcaa
caccaggcaaaacgcgaacaactccggcgcctggcgtttgagtttgccccacttcagcaa
cagtaccaacagttacaacagcaacgcaatgaacagcagcaacgttatcaacaggcagga
gaacaacttgccgaacggcgcaaaacctgggccgaagttaaccagcagtaccaggatgta
gccaggatctgtgagctggaaagcgccattgttaacctgaatgccgagcgggaacgcctg
caggctggccaaccctgcccattatgtggagcaacagagcacccggcagttgcccattac
caggcactgaaaccagacgaaaaccagcggcgcaaaactgaactggaagagcgtaagcgc
cttctggcagaagaaggtgcaacgttaaaaggccagcatgatgcactggctgcacaaaca
gaacaattaacccgccagcaggccagcgttgaacaggcactggaacaccatcaacagcaa
tgggccgaattatgccatgcgctgaacctgtcggcggcaccaggtgacgatatcacgcag
tggctgagcgacaatgacgcttaccaggctcaactccaggcacaccaggtatggctgggg
caacaagcgctggtagatcagacccgggcgcaagtcaccgaattatcacaatcgtgcgaa
caacaacgcctcatactgcaaacaacactggcaacatggcaattgccctggccgcaaccc
ggtgaagttgaagcctggctggctgctcgtgaaaaacaccgtgaacaattcctccggcaa
caaaccttgctggcacaattgaatacagacgacgaagccatcaggctaatcctccggaca
ctggaagacgatggcagtgatacaccgctacccgacgaagagactcagcaacagcggatt
caggactggtcacgccataacagcgaatgggtggcgttacacagccagtctgaagcgctg
acccaacagttgcagcaagaaaaagagcaactggcacagcaccagctcgcactggataac
gccctgcaggccagccagtttgcatccacagaagccatgacggcggcattgctcgatgac
accactcgccagcaactggcagaccgtctggccgccctggctcaacaggtacaacagcaa
acagcactggcagaacaggctaaacaacagcttgccacgcatattgcggcacggccagag
caccttagcgagcagaacacccagagtgagctggaatcacaactggcgctggttaacact
cagtggcgtgagaatacctccggccagggggcattgcgccagcaactggtgcacgatacc
cgccaaagagaacaacaacaaagtctgcttcactcccttgaacaacagcagcaattagtc
accgactggggcgcgttgaatgaaatgatcggctcaaaagaaggtgataagttccgcaag
tttgcacaggggctgacactggataaccttgtgtggctggctaaccagcaactgcaccgg
ttacatgggcgttatctgttacaacgtaaagacaacgaagcactggaattgcaagtggtg
gacacctggcaggccgatgcagtgcgtgatacccgaacattgtcaggtggggaaagcttc
ctggtcagcctggcgctggcgctggcgttgtctgacctggttagccataaaacacgtatt
gactcattattccttgatgaaggctttggcaccctggatgcagaaacactggataccgcc
cttgatgcactggatactctcaatgccagcggaaaaatcattggtgttatcagccatgta
gccgccatgaaagagcgtattccggtgcaaatcaaagtccgtaaagtgaacgggctgggg
tacagccggctggataagcatttcgcagtggacagctaa
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