Mangrovibacter phragmitis: MPHASIOC01_004546
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Entry
MPHASIOC01_004546 CDS
T10640
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
mphg Mangrovibacter phragmitis
Brite
KEGG Orthology (KO) [BR:
mphg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mphg03021
]
MPHASIOC01_004546 (rapA)
Transcription machinery [BR:
mphg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
MPHASIOC01_004546 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
AAA_34
Motif
Other DBs
NCBI-ProteinID:
XCE74362
LinkDB
All DBs
Position
4731472..4734378
Genome browser
AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAIDARMVTLLFPATGENRLYARNDSPITRVMFNPGDT
ITSHEGWQLKVDEVKEENGLLAYLGTREDTQESGVILREVLLDSKLVFSKPQDRLFAGQI
DRMDRFALRFRARKYQSEQYRMPWSGLRGMRTSLIPHQLHIANDVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH
DSENPFYTEQLIICSLDFVRRNKQRLENLCEAEWDLMVVDEAHHLVWSEEAPSREYQVIE
QLAERVPGVLLLTATPEQLGMQSHFARLRLLDPSRFHDYEAFVAEQNNFRPVADAVSLLL
EGNHLSDESLNTLSELIGEQDIEPLLKAANSGGESSEAARQELVSMLTDRHGTSRVLFRN
TRSSVKGFPQRELHTIRLPLPTQYQTAIKVSGIMSARKTAEERARDMLYPEQIYQEFEGD
SGTWWNFDPRVDWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNMVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLENTAQSILVRWYHEGLDAFEHTCPTGRAIYDDVCESLIGYLAAPENE
EGFAELIHRCRTQHDALKTQLEQGRDRLLEIHSNGGEKAQALANEIAEQDDDTALVNFAM
NLFDIIGINQDDKGDNMIILTPSDHMLVPDFPGLPEDGCTITFSRDVALSREDAQFITWE
HPLIRNGLDLILSGDTGSCALSLLKNKALPVGTLLVEMVYVVEAKAPRQLQLQRFLPPTP
VRMLLDKNGTNLAAQVEFESFNRQLSAVNRHTSSKLINAVQQDVHGILQHGEEQVGKAAQ
ALIDAARKEADDKLSAELSRLEALKAINPNIRDDELSAIEDNRQQVLESLSEASWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcagcgctggatcagcgatacggaaagcgaactgggactggga
acagtagtagcaattgatgcccgcatggtgacattattgttcccagcaaccggagaaaat
cgtctgtatgccaggaatgactcccccatcacccgcgtgatgtttaaccctggggatacc
attaccagccatgagggctggcagttaaaagtggatgaagtcaaggaagagaatggatta
ctcgcctacctgggtacccgtgaagacactcaggaaagtggcgtcatactgcgtgaagta
ctgctggacagtaaactggtgttcagtaaaccacaggatcgcctgtttgccggccaaatt
gaccgcatggaccgttttgcactgcgctttcgtgccaggaaataccagagcgagcaatac
cgcatgccctggagtggcctgcgtggtatgcgcaccagcctgataccacatcagttacat
attgccaacgacgtaggtcgtcgccatgccccccgcgtgttacttgccgatgaagtcggt
ctggggaaaaccattgaagccggtatgataattcaccagcaattgctgagtggcgctgct
gaacgtgtgttgatcattgtcccggaaaccctgcaacatcagtggctggtggaaatgctg
cgccgctttaacctgcggtttgcgttgtttgacgatgagcgatacgcagaagcgcaacac
gacagcgagaacccgttttataccgaacaactgattatttgctcactggactttgtgcgc
cgcaacaagcagcgtctggaaaacctgtgcgaagccgagtgggatttaatggtggtggat
gaagctcaccatttggtatggagcgaagaagccccaagccgcgaataccaggtaattgag
cagctggctgaacgcgtaccaggcgtgctgttattaactgcaaccccagagcagcttggc
atgcaaagccattttgcccgcctgcgcctgttagacccaagccgttttcatgattacgaa
gcatttgttgccgagcaaaataacttccgcccggttgccgatgccgtttctctgttactt
gaaggtaaccatctgagtgatgaaagcctcaatacactgagcgaactgattggcgaacag
gatatcgaaccgttactgaaagcggctaatagtggtggcgaaagcagtgaagcagcccgc
caggaactggtttccatgctgacagaccgccacggcaccagccgggtgctgttccgtaac
acccgcagcagtgtgaaaggctttccacagcgtgaactccatactattcgtctgccatta
cccactcagtatcaaacggctataaaagtctctggcattatgagtgcgcgtaaaacggcg
gaagaacgtgcgcgcgacatgctctacccggaacagatttaccaggaatttgaaggcgac
agcggcacctggtggaactttgacccgcgggttgactggctgatgggatacctcaccagc
catcgctcacaaaaagttctggttatttgcgccaaagcagcgacagcactgcaactggag
caggtgttacgtgaacgtgaagggatccgcgcagccgtcttccatgaaggtatgtcaatt
attgaacgtgaccgtgcagccgcctggtttgctgaggaagataccggcgcacaggtgctg
ttatgctcggaaattggttctgaagggcgtaacttccagtttgccagcaacatggtgatg
tttgacctgccatttaaccctgatttacttgaacagcgcatcgggcgtctggatcgtatt
ggccaggcacacgacatccagattcacgtcccatatctggaaaataccgcgcaatccatt
ctggtccgctggtatcacgaagggctggatgcttttgaacatacctgcccaactggccgc
gccatttacgatgacgtctgtgaatcactgattggctacctggcagcacccgaaaacgaa
gaaggctttgctgagctgattcaccgctgccgcacccagcatgacgcactgaaaacccag
ttagaacagggccgtgaccgcctgctggagattcactccaacggtggcgaaaaagcccag
gcgctggccaatgaaatcgccgaacaggatgatgatactgcgctggtgaattttgccatg
aacctgttcgacattattggcatcaaccaggatgacaaaggcgataacatgattatcctg
acgccatctgaccatatgctggtaccagatttcccgggcttgcctgaagatggctgcacg
attaccttcagccgcgatgtcgcgctttcccgtgaagatgcgcaattcatcacctgggag
catcctttaattcgtaatggactcgatctgattctgtctggcgataccggcagttgcgcg
ctttccttactgaaaaacaaagcactgcccgttggcaccctgctggtcgaaatggtgtat
gtcgttgaagccaaagcacccagacaacttcagttgcagcgtttcctgccaccgacccca
gtacgtatgctgttggacaaaaatggcaccaacctggcagcgcaggtggaattcgaaagc
tttaaccgccagttaagcgcagtgaaccgccacaccagcagcaagcttatcaatgccgtc
cagcaggatgtacacgggattttgcagcatggcgaagagcaagtagggaaagcggcacag
gcgttaatcgatgcggcgagaaaagaggctgacgataaactgtctgccgagttatcacgc
cttgaggcgttgaaagccattaaccccaatattcgcgacgacgaactgagtgccattgaa
gataaccgccagcaagtactggagagtttgtccgaagcctcatggcggctcgacgcgctg
cgcctgattgtggtcacacaccagtaa
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