Mycoplasma phocae: DA803_00190
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Entry
DA803_00190 CDS
T05577
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mpho
Mycoplasma phocae
Pathway
mpho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DA803_00190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpho03019
]
DA803_00190
Messenger RNA biogenesis [BR:
mpho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DA803_00190
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Motif
Other DBs
NCBI-ProteinID:
AXE60521
UniProt:
A0A2Z5IQI3
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All DBs
Position
complement(47772..49613)
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AA seq
613 aa
AA seq
DB search
MKPTKIFGLGGMQEIGKSTLIIEYDQHIFIIDTGIKFCDSFVTGINGSIPDFTYLAENQD
RIAGLFITHGHEDHIGGVPYLVQQVDIKRIYAPRIAIQYLKLKFDDMKIKKQIEFFETEK
DAVWNFGDCQVDYWTAQHSIPDAFGIRIKTPNGSLMMTGDFRFDYTPIGNLTDFSKLKQI
GDEGLDVLFSDSTNAMRPNHSPSESDILKDIKKYMLKAEKKIIVTAFASNLTRIKAIIEL
GAELNKKVIAFGRSMVDNIDIGRRLGYINAPEEIFVDKKNLSKYDDNELLILTTGSQGEE
LAGLAKMSYGKHPNITIKPKDTIIFSSSPIPGNRSKIELLVNRLYKLGAIIRENGIDGYL
HTSGHAYRDEHLKIFQLTKPKYFMPYHGEYRMSVVHGYTATESGVNAKNIIVAKLGDVYY
LENHKIRLSNEKVYFGPVFIDGTVLSKANSQILKERMELGENGFLNVIIAINKEKNIILG
KPRVVSRGAFFVKNSLHLVEEVKRIVHGAVLYTIKNTTDWTVPQLKQLIIDRLAPFFYKQ
KRRNVVIIPTILFADKTESNSEIQDSNKNSKTKGKETKDNKKKKNSNKPTKEKTKNKKIS
KNSQEVLVEKENK
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaacaaaaatctttggacttggaggaatgcaagaaattggtaaaagtacttta
ataatagaatatgaccaacatattttcattattgacactggtattaaattttgtgattct
tttgtaactggaataaatggttcaattccagattttacctatttagcagaaaatcaggac
agaatcgctggacttttcattacccatggtcatgaggatcatattggtggtgtaccatat
ttagtacagcaagttgatattaaacgcatttatgcaccgagaattgcaatccaatattta
aaattaaaattcgatgatatgaaaatcaaaaaacaaattgaattttttgaaactgaaaaa
gatgcagtttgaaattttggtgattgtcaagtagattattgaacagcacagcattcaatt
ccagatgcgtttggaattagaatcaaaaccccaaatggttcacttatgatgactggagat
tttcgatttgactacactccaattggaaatttaaccgatttttcaaaattaaaacaaatt
ggagatgaaggtctggatgtattattttctgattcaacaaatgctatgcgtcctaatcat
tcaccatcagaaagtgatattttaaaagacattaaaaagtacatgctaaaagctgaaaag
aaaattatcgtaactgcgtttgcttcaaatctaacaagaattaaggccataattgaacta
ggagccgaacttaataaaaaagttatcgcttttggtcgttcaatggttgacaatattgat
attggtagaagacttggttatatcaacgctcctgaagaaatttttgttgataagaaaaat
ctctcaaaatatgatgataatgaactactaattctaacaacaggatcacaaggcgaagag
cttgctgggcttgctaaaatgtcatatggtaaacatccgaatattactattaaaccaaaa
gatactattattttttcatcaagtccaattccaggtaaccgttcaaaaattgaattgctt
gttaatcgtttatacaaacttggagcaattattagagaaaatggcattgatggatatcta
catacatcaggacatgcctaccgagatgaacatcttaaaatttttcagctaacaaaacct
aaatattttatgccatatcatggtgaatatcgaatgagtgttgttcatggttatacagca
acagaatctggagttaatgctaaaaacattattgttgcaaaattaggagatgtttattat
ttagaaaatcataaaattagattatcaaatgaaaaagtatatttcggaccagttttcatc
gatggaacggtgctatctaaggctaattctcaaattctcaaggaaagaatggaattagga
gaaaatggatttctaaatgttattattgcaattaataaggaaaaaaacattattcttggt
aagccaagagttgtttcgcgtggagcattctttgttaaaaattcacttcacctagttgag
gaggttaaaagaattgttcacggcgcagttttatataccattaaaaacacaactgattgg
acagtaccacaattaaaacaacttataattgatcgtttagcgccatttttctacaaacaa
aaacgaagaaatgttgtaattattccaactattctatttgctgataaaactgaaagcaat
agcgaaattcaagatagcaataaaaattctaagactaaaggtaaagaaactaaagataac
aaaaagaaaaaaaattctaataagccaacaaaagaaaaaactaaaaataaaaaaatttct
aaaaacagtcaagaagttttagttgaaaaagaaaataaatag
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