Mycolicibacterium phocaicum: MPHO_12850
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Entry
MPHO_12850 CDS
T07283
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mphu
Mycolicibacterium phocaicum
Pathway
mphu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mphu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MPHO_12850 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mphu03019
]
MPHO_12850 (rnj)
Messenger RNA biogenesis [BR:
mphu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MPHO_12850 (rnj)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BBZ54293
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Position
complement(1298757..1300436)
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AA seq
559 aa
AA seq
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MTRPDFAPPGPLEPGGLRVTALGGISEIGRNMTVFEHLGRLLIIDCGVLFPTHDEPAVDL
ILPDIRHIEDRLADIEALVITHAHEDHIGAIPYLLKMRPDIPVVGSRFTLALVAAKCREH
RLKPNMQIVAEGQRSTHGVFECEYFAVNHSIPDALAIAVHTGAGTVLHTGDIKLDQLPPD
GRPTDLPGMSRLGEQGVDLFLCDSTNAEIPGVSPSESEVGPNLHRLIRGADGRVIVACFA
SNVDRVQQIIDAAVALGRKVSFVGRSMVRNMGIAKELGFLNVDDDDVIDIGAAELLPADR
VVLITTGTQGEPMAALSRMSRGEHRSITLTAGDLIILSSSLIPGNEEAVYGVIDSLAKIG
ARVVTNQQVRVHVSGHAYAGELLFLYRGVRPRNVMPVHGTWRHLRANAKLAIRTGVPEES
VVLAENGVSVDLINGQARIAGAVPVGKVFVDGLVLGDVGDATLGERLTLTSGFIAVTVVI
SRETGKPVAPVHLHSRGFSEDPKALEPGAEKAQTALENLVSEQVTDPARIAQAVRRAVGK
WVGETYRRQPMIVPTVLEV
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
gtgaccagacccgacttcgcaccgcccggccccttggagccgggcggtctgcgtgtgacg
gccctcggtggcatcagcgaaatcggccgcaacatgaccgttttcgagcacctcggccga
ctgctcatcatcgactgcggcgtgctgttcccgacgcacgacgagcccgccgtcgacctg
atcctgccggacatccggcacatcgaggaccggctggccgatatcgaggcgctggtgatc
acccacgcgcacgaggaccacatcggcgccattccgtatctgctcaagatgcggcccgac
atccccgtggtgggctcgcggttcacactggccctggtggccgccaagtgccgcgagcac
cggctcaagccgaacatgcagatcgtcgccgaagggcagcgcagcacgcacggcgtgttc
gagtgcgagtacttcgcggtcaaccactcgattcccgatgccctcgccatcgccgtgcac
accggtgccggcacggtgctgcacaccggtgacatcaagctcgaccagctgccgccggac
ggccggcccaccgacctgcccgggatgtcccggctcggcgaacagggcgtcgacctgttc
ctgtgcgactcgaccaacgccgagattcccggggtcagcccctccgagagcgaggtcggc
cccaacctgcaccggctgatccgcggcgcggacggccgcgtcatcgtggcgtgcttcgcg
tcgaacgtcgaccgcgtgcagcagatcatcgacgccgccgtggcgctgggacgcaaggtg
tccttcgtcgggcgttcgatggtccgcaacatggggatcgccaaggaactcggcttcctc
aacgtcgacgacgatgacgtcatcgacatcggcgcggccgaactgctgcccgccgaccgc
gtcgtgctgatcaccaccggaacccagggcgagcccatggcggcgctgtcccggatgtcc
cgcggcgagcatcgcagtatcaccttgacggccggcgacctgatcatcctgtccagctcg
ctgatccccggcaacgaggaagccgtctacggcgtgatcgactcgctggccaagatcggc
gcccgcgtcgtcaccaatcagcaagtgcgcgtgcatgtttcgggccacgcctacgccggt
gagctgctgttcctgtaccgcggggtgcggccgcgcaacgtcatgccggtgcacggcacc
tggcggcacctgcgcgccaacgccaaactcgccatccgcaccggggttccggaggagagc
gtcgtgctcgctgagaacggcgtcagcgtcgacctgatcaatgggcaggcccggatcgcc
ggtgccgtaccggtcggcaaggtgttcgtcgacggtctggtgctgggtgacgtcggtgac
gccacgttgggcgaaaggctcacgctgacttcgggtttcatcgcggtcaccgtggtgatc
agccgcgagaccggcaagccggtggctccggtgcacctgcactcgcgcggcttctccgag
gaccccaaggctctcgagccgggtgccgagaaagcgcagacggcactggaaaaccttgtc
tccgagcaggttaccgacccggcgcgcatcgcccaggcggtgcgccgggctgtcggcaaa
tgggtcggcgagacctatcggcgccagccgatgatcgtgccgaccgtcctcgaggtttaa
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