Mycolicibacterium phocaicum: MPHO_23180
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Entry
MPHO_23180 CDS
T07283
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
mphu
Mycolicibacterium phocaicum
Pathway
mphu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mphu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MPHO_23180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mphu03021
]
MPHO_23180
03019 Messenger RNA biogenesis [BR:
mphu03019
]
MPHO_23180
Transcription machinery [BR:
mphu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MPHO_23180
Messenger RNA biogenesis [BR:
mphu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MPHO_23180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
VWA_2
Fungal_virus_P2_C
AAA_22
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
BBZ55326
LinkDB
All DBs
Position
complement(2413651..2415633)
Genome browser
AA seq
660 aa
AA seq
DB search
MTDTDLFTADGNTDAPATEAPAAGRSGSLTSLLLPDLRALAAEVGVKGTSGMRKSELIAA
IREHRGEANGAKTEAKAAKAEAKNETKTAEAVNGTDAPSEAKEAPAATNTDAAAGDAPAA
EQAPRRERRGASRRAGAPADGDAGDAGDKPAEKADKAENTENADAPREERNRERNADNSN
QGGNKAEGNQGGNREQGGNRDRGGDNQGGNRNQGGNRNQGGNRDQGDNSNNNDDDDDSRQ
GRRGRRFRDRDRRRRGERGDNQGGNAETELREDDVLQPVAGILDVLDNYAFVRTSGYLAG
PNDVYVSMNMVRKNGLRRGDAVTGAVRVPREGENTGGGGNNPRQKFNPLVRLDSVNGGPV
EAARNRPDFTKLTPLYPNQRLRLETTPERLTTRVIDLIMPIGKGQRALIVSPPKAGKTTI
MQDIANAITKNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTQAAELAI
ERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNI
ENGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRK
DELLLGPDEFAIVHKLRRVLSGLDPHQAIDLLMSQLRKTKTNYEFLVQVSKTAPGNMDAD
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
gtgactgatacggacctcttcaccgccgacggcaacactgatgcgccggcaactgaagcg
ccggcggccggacgctccggatcgctgaccagccttctgctccccgacctgcgcgcgctc
gccgccgaggttggcgtcaagggcacctccgggatgcgcaagagcgaactgatcgccgcc
atccgcgagcaccgtggcgaggccaacggcgccaagaccgaggccaaagccgccaaggcc
gaagccaagaacgagaccaagaccgccgaggccgtgaacggcaccgacgcccccagcgag
gccaaggaagccccggcggcgaccaacaccgacgctgccgccggtgacgcccccgcggcc
gagcaggccccgcgccgcgagcgccgtggcgcatcgcgccgggccggcgcgcccgccgac
ggcgacgccggtgatgccggcgacaagcccgccgagaaggcggacaaggccgagaacacc
gagaacgccgacgccccccgcgaggagcggaaccgcgagcggaacgccgacaacagcaac
cagggcggcaacaaggccgaaggtaaccagggcggcaaccgcgagcagggtggcaaccgc
gaccgcggcggcgacaaccagggcggcaaccgcaaccagggcggcaaccgcaaccagggt
ggtaaccgcgaccagggcgacaactccaacaacaacgacgacgacgacgacagccgccag
ggccgtcgcggccgtcggttccgtgaccgcgaccgtcgtcgtcgtggcgagcgcggcgac
aaccagggcgggaacgccgagaccgaactgcgcgaggacgacgtcctgcagccggtcgcc
ggcatcctcgacgtgctggacaactacgcgttcgtccgcacgtcgggctacctggccggg
ccgaacgacgtctacgtctcgatgaacatggtccgcaagaacggactgcgccgcggcgac
gcggtgacaggcgccgtgcgggtgccgcgcgagggtgagaacaccggcggcggcggcaac
aacccgcgccagaagttcaacccgctggtgcgtctggacagcgtcaacggcggtccggtc
gaggccgcgcgcaaccgccccgacttcaccaagctgaccccgctgtacccgaaccagcgg
ctgcgcctggagaccacgccggagcggctgaccacgcgtgtgatcgacctgatcatgccg
atcggtaagggccagcgggcgctgatcgtgtccccgccgaaggccggtaagacgacgatc
atgcaggacatcgccaacgcgatcaccaagaacaacccggaatgccacctcatggtggtg
ctcgtcgacgagcgtccggaagaggtcaccgacatgcagcgctcggtgaagggtgaggtc
atcgcctcgaccttcgaccggccgccgtcagaccacacccaggccgccgagctggccatc
gagcgggccaagcgcctggtcgagcagggcaaggacgtcgtggtgctgctggactcgatc
acccgtctgggccgcgcgtacaacaacgcgtcgccggcgtcgggccgcatcctgtccggt
ggtgtcgactccaccgcgctgtacccgccgaagcgcttcctcggcgcggcgcgcaacatc
gagaacggtggctcgctgaccatcatcgcgaccgcgatggtcgagaccggttccaccggt
gacaccgtcatcttcgaggagttcaagggcacaggtaacgccgagctcaagctcgaccgc
aagatcgccgagcgtcgcgtgttcccggccgtcgacgtcaacccgtccggtacccgtaag
gacgagctgctgctcggcccggacgagttcgcgatcgtgcacaagctgcgtcgcgtgctg
tcgggtctggacccgcaccaggccatcgacctgctgatgagccagctgcgcaagaccaag
accaactacgagttcctggttcaggtctcgaagacggccccgggcaacatggacgccgac
tag
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