Mycolicibacterium phocaicum: MPHO_23990
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Entry
MPHO_23990 CDS
T07283
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mphu
Mycolicibacterium phocaicum
Pathway
mphu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mphu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MPHO_23990 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mphu03019
]
MPHO_23990 (deaD)
03009 Ribosome biogenesis [BR:
mphu03009
]
MPHO_23990 (deaD)
Enzymes [BR:
mphu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MPHO_23990 (deaD)
Messenger RNA biogenesis [BR:
mphu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MPHO_23990 (deaD)
Ribosome biogenesis [BR:
mphu03009
]
Prokaryotic type
rRNA helicases
MPHO_23990 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BBZ55407
LinkDB
All DBs
Position
complement(2496374..2498308)
Genome browser
AA seq
644 aa
AA seq
DB search
MTTSSPEADPDSGGPTTTADPAAETSADTGAEVTFADLNIRPEVLRALTDVGYESPSPIQ
AATIPAILNGSDVVGLAQTGTGKTAAFAVPVLSKIDPTSRNTQCLVLAPTRELALQVAEA
FGKYGAHLNINVLPIYGGSSYTPQLAGLKRGAQVVVGTPGRVIDHLSKGSLDLSHLDYLV
LDEADEMLQMGFAEDVERILADTPEYKQVALFSATMPPAIKKITARYLHDPVEVTIKAKA
QTAENITQRYIQVAGPRKMDAITRLLEVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAA
INGDIPQAVRERTINALKDGSIDILIATDVAARGLDVERISHVLNYDIPHDPESYVHRIG
RTGRAGRSGTALLFVTPRERHLLNSIERVTRKKLIESQLPSVDDVNAQRVAKFRDAITDS
LSAPGIELFRRLIEDYERDNNVPLAEIAAALAVQTQGGEEFLMKEPPPEKRRERPDRDDR
GDRGERERKPRSTRDDLATYRIAVGKRHKVIPGAIVGAIANEGGLNRSDFGHISIRVDHS
LVELPAKLSKDTLKKLENTRISGQLIHLELDKGGRSGGYEDRGGRPDRGSYSDRGGRQDR
GSDRGSSSDRGGRQDRGPYKGRGRDDDRRGGHGEGRGEGKRKYK
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgtcttcacccgaggccgacccggattcgggcggccccaccaccaccgctgat
cccgctgcagaaacctccgccgacaccggcgccgaggtcacgttcgccgacctgaacatc
cggccggaggtgctgcgggcactgaccgacgtcggatacgaatcaccgtcgcccatccag
gcggccaccattcccgcgatcctgaacggctccgacgtcgtcggcctcgcccagaccggt
accggcaagaccgccgcgttcgcggtcccggtgctgtccaagatcgacccgaccagccgc
aacacgcagtgtctggtgctggcgccgacgcgcgagctggcgctgcaggtggccgaggcg
ttcggcaagtacggcgcgcacctcaacatcaacgtgctgccgatctacggcggctcgtcc
tacacgccgcagctggccggtctcaagcgcggcgcgcaggtcgtggtcggcaccccgggc
cgcgtcatcgaccacctgtcgaagggcagcctggacctctcgcacctggactacctggtg
ctcgacgaggccgatgagatgctgcagatgggcttcgccgaggacgtcgagcgcatcctg
gccgataccccggagtacaagcaggtcgcgctgttctcggcgaccatgccgccggccatc
aagaagatcaccgcccggtacctgcacgacccggtcgaggtgacgatcaaggccaaggcg
cagacggccgagaacatcacgcagcgctatatccaggtggccggcccccggaagatggac
gccatcacccggctgctcgaggtcgagccgttcgaggcgatgatcgtcttcgtccgcacc
aagcaggccaccgaggaagttgccgaaaagctcagggcccgtggcttttccgccgccgcg
atcaatggtgacatcccgcaggcggtccgtgagcgcaccatcaacgcgctcaaggacggc
tccatcgacatcctgatcgccaccgacgtcgcggcccgcggcctggacgtcgagcgcatt
tcccacgtgctgaactacgacatcccgcacgaccccgagtcgtacgtgcaccgcatcggc
cgcaccggccgcgcggggcgctcgggcaccgcgctgctgttcgtcacgccgcgcgaacgg
cacctgctcaactcgatcgagcgcgtcacgcgtaagaagctcatcgagtcccagctgccg
tcggtcgacgacgtcaacgcgcagcgcgtggcgaagttccgcgacgccatcaccgactcg
ctcagtgcgccgggcatcgagctgttccgccgcctgatcgaggactacgagcgcgacaac
aacgtgccgctcgccgagatcgcggcggcgctggcggtgcagacccagggcggcgaagaa
ttcctgatgaaggagccgccgccggagaagcggcgcgagcgtccggaccgtgacgaccgc
ggggaccgtggcgagcgcgagcgcaagccccggtcgacgcgtgatgacctggccacctac
cgcatcgcggtgggcaagcggcacaaggtgattccgggtgccatcgtcggcgccatcgcc
aacgagggtggcctgaaccgcagcgacttcgggcacatcagcatccgtgtcgaccactcg
ttggtcgagctgcccgccaagctgagcaaggacacgctcaaaaagcttgagaacacccgc
atttcgggccagctgattcacctggagctggacaagggcgggcgctccggtggttacgag
gatcgtggcggacgccccgaccggggttcgtactccgaccgcggtggccgtcaggaccgt
ggctcggaccgcggttcgtcctccgaccgtggtggccgtcaggaccgcggaccgtacaag
ggccggggtcgtgacgacgaccggcgcggtggacacggcgaaggtcgaggcgagggcaag
cgtaagtacaagtga
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