Mycolicibacterium phocaicum: MPHO_38320
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Entry
MPHO_38320 CDS
T07283
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mphu
Mycolicibacterium phocaicum
Brite
KEGG Orthology (KO) [BR:
mphu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mphu03019
]
MPHO_38320 (hrpA)
Enzymes [BR:
mphu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MPHO_38320 (hrpA)
Messenger RNA biogenesis [BR:
mphu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MPHO_38320 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
APHB_HrpA
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND_NTPase5
nSTAND3
NACHT
T2SSE
PhoH
SLFN-g3_helicase
ABC_tran
TsaE
Motif
Other DBs
NCBI-ProteinID:
BBZ56840
LinkDB
All DBs
Position
3971345..3975268
Genome browser
AA seq
1307 aa
AA seq
DB search
MTEAPLPPPILVLVSDQQQRELRDRLDGLTIRDAARLDRRLKNLRGDNPEKIAEQIAAAE
AVVAARLAAVPRITYPDLPVTDRRAEIAKAITDNQVVIVAGETGSGKTTQLPKICLELGR
GIRGTIGHTQPRRLAARTVAQRIADETGTSLGGAIGYTVRFTDQASDSTLVKLMTDGILL
AEIQRDRRLLRYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLKVIVTSATIEPERFAK
HFGGAPIVEVSGRTYPVEIRYRPLEVPAAVDDSDDPDDPDHEIVRTEPRDQTEAIVDAVR
ELESEPAGDVLVFLSGEREIRDTAEALRDALSGDTFPTEILPLYARLPTADQQKVFNAKP
GGPRRIVLATNVAETSLTVPGIRYVVDPGTARISRYSRRTKVQRLPIEPISQASAAQRSG
RSGRTAPGVCIRLYSEEDFASRPRYTDPEILRTNLGAVILQMAALGLGDIEAFPFLDPPD
ARSIRDGIQLLQELGAFDAKGAITDVGRRLARLPLDPRVGRMILQADTEGCVREVLILAA
ALSIPDPRERPSDREEAARQKHARFADEHSDFISYLNLWNYLREQRNQLSGSAFRRMCRD
EFLHYLRIREWQDLVGQLRSIAGDLGIRESGDDADPLRIHTALTAGLLSHVGLREGETRD
YQGARNSRFVLAPGSVLTKKPPRWIVVADLVETSRLFGRIAARIEPETVERVAGDLLQRT
FSEPHWDARRGAVMAFERVTLYGLPLVPRRRVGYAQVDPVVARELFIRHALVEGDWQTRH
HFFRDNTRLRTELEELEERARRRDLLAGDDEVYAFYDQRVPESAVSARHFDAWWKKQRHV
TPDLLTMTREDLLRTDTDADQPDTWQTGDLSLPVSYRFEPGAADDGVTVHVPVEVLARLG
GDGFAWQVPALREELVTALIKSLPKDLRRNFVPAPDTARAVLPGLNPGDGSLLEELQREL
RRRSGILVPIDAFDLSKIPDHLRVTFAVEKDGTEVARGKDLGALHDRLAGSVRQAVAGAV
AGDLQRTGLKAWPEDLSELPRSVESSTGGHTVRGFPAFVDTGAAVDIRVFPTAAEQAAAM
GSGLRRLLRLAAPSPVKAAERALNPRARLALSSNPDGSLEDCADAAVRVLAPKPVWTGAE
FGALRDSVAAKLVPTTLDVVGRVERVLTAAHAAQVALPDKPSALQADAVADIRAQLARLL
PVGFVAATGVSHLADLTRYLTAVGRRLERLPQAPAADRERMDRIHAVEDAYDELRQALSP
LRCQGEDVRDIARQIEELRVSLWAQQLGTPRPVSEQRIHRAIDAIVP
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
gtgacggaagctcctctgccaccacctatcctggtactggtgtccgaccaacagcagcgc
gaactgcgtgaccgtctggatggtctgaccatccgcgacgccgcgcggctcgaccgtcgg
ctgaagaacctccgtggcgacaacccggagaagatcgccgaacagatcgcggcagcggag
gcggtggtggccgctcggctcgcggccgtgccgcgcatcacctaccccgacctgccggtc
accgaccgccgtgctgagatcgccaaggccatcaccgacaaccaggtggtgatcgtcgcc
ggcgagaccggctcgggcaagacgacgcagctgcccaagatctgtctggagctcggccgc
ggtatccgcggcaccatcgggcacacccagccgcgccggctggctgcgcgcacggtggcg
cagcgcatcgccgacgaaaccggcacttcgctgggcggggccatcggttacaccgtgcgg
ttcaccgaccaggccagcgactcgactctcgtcaaactgatgaccgacggcattctgctc
gccgagattcagagggatcgccggctgctccggtacgacaccctgatcctcgacgaggcg
cacgaacgaagcctcaacatcgacttcctgctcgggtacctgcgcgagctgctgccgcgg
cgccccgacctgaaggtcatcgtgacatcggcgaccatcgagcccgagcgattcgcgaag
cacttcggcggagccccgatcgtggaggtctcgggccgtacctatcccgtcgaaatccgt
taccggccactggaagtccccgccgcggtggacgacagcgatgaccccgacgatccggac
cacgagatcgtccgcaccgagccccgggaccagaccgaggccatcgtcgacgcggtgcgc
gagctggaatccgaaccggccggcgatgtgctcgtctttctgtccggcgagcgcgagatc
cgtgacaccgcagaggctttgcgggatgcgctgtccggcgacacatttccgaccgagatt
ctgccgctgtacgcccggttgccgaccgcggatcagcagaaggtcttcaatgcgaagccg
ggcgggccgcgccggatcgtgttggccaccaacgtcgccgagacgtcgctgaccgtcccc
ggcatccggtacgtcgtcgacccgggcacggcgcgcatatcgcggtacagccggcgcacc
aaggtgcagcggctgccgatcgaaccgatctcgcaggcgtcggccgcgcagcggtcgggc
cgatccggtcgtacggctccgggcgtgtgtatccggctgtactcggaagaggacttcgcg
tcgcggccgcggtacaccgacccggagatcctgcggaccaacctcggtgcggtcatcctg
cagatggcggcgctcggcctcggcgatatcgaggccttcccattcctggacccgcccgat
gcgcgcagcatccgcgacggcatccaattgctccaagaactgggcgctttcgatgccaag
ggcgccatcaccgacgtgggacgccggctggcccggttgccgctggacccgcgcgtcggc
cggatgatcctgcaagccgacaccgaaggctgcgtgcgcgaggttctgatcctggctgcc
gcactgtcgataccggatccgcgggagcggccgtcggaccgggaagaagccgcccggcag
aagcacgcccgcttcgccgatgagcattcggacttcatttcctacctcaacttgtggaac
tacctgcgcgagcagcggaaccagttgtccggcagcgcgttccgccggatgtgccgcgac
gagttcctgcactacctgcggattcgcgaatggcaggacctggtcggccaattgcgcagc
atcgccggcgatctcggcatccgggagtcgggcgacgatgccgacccgctgcgcatccat
actgcgcttaccgccgggctgctgtcgcatgtcgggctgcgggaaggtgagacgcgggac
taccagggggctcgtaactcgcggttcgtcctggctccgggatcggtgctgacgaagaag
ccgccgcggtggatcgtcgtcgcggatctggtggagaccagccggctgttcgggcgtatc
gcggcacgcatcgaaccggagaccgtcgagcgggtcgccggagatctgttgcagcgcacc
ttcagtgagccgcactgggatgcccgtcggggtgcggtcatggcgttcgaacgggtgacg
ctctacgggctgccgctggtgccgcgccgtcgggtggggtacgcgcaggtcgatccggtg
gtggcacgcgagctgttcatccggcacgcgttggtcgaaggcgactggcagacgcggcac
cacttcttccgtgacaacacgcggctgcgaaccgaactggaggagctcgaagagcgcgcc
cggcgccgggatctgctggccggcgacgacgaggtctacgccttctatgaccagcgcgtg
ccagagagcgccgtgtcggcacggcatttcgacgcctggtggaagaagcagcggcatgtg
acgccagacctgctcaccatgacgcgcgaggatctgctgcgcaccgacaccgacgccgac
cagccggacacctggcagaccggcgacctgtcgctgccggtgagctaccggttcgagccc
ggcgccgccgatgacggtgtcacggtgcacgttccggtcgaggtgctggctcggctcggc
ggtgacggtttcgcgtggcaggtgcccgcgttgcgcgaggagttggtcaccgcgctgatc
aaatcgttgcccaaggacctacggcgtaacttcgtacccgcacccgataccgcgcgggcg
gtgctgccgggcctaaatccgggagacggctcgctgctggaggagctacagcgtgaactg
cgcaggcgcagtggcattctggtgccgatcgacgccttcgacctgagcaagattccggac
cacctgcgggtcaccttcgcggtcgagaaagacggcaccgaggtggcacgcggcaaggac
ctgggcgcgctgcacgatcggctggccggctcggtgcggcaggcagtggctggggccgtc
gcgggtgatctgcagcggacgggtctgaaggcctggcccgaggacctgtccgagttgccg
cgcagcgtggagagctcgaccggcggacacaccgtccgcggatttcccgcgttcgtggac
accggtgcggcggtggacatccgggtgtttccgacggcagccgagcaggccgcggccatg
ggttcgggcctgcggcggttgctgcggttggcggcgccgtcgccggtcaaggcggctgag
cgcgctctcaatccccgcgcgcgcctcgcgctgtcgagcaatcccgacggcagcctcgaa
gactgcgccgacgccgcggtacgggtgttggcgcccaaaccggtgtggaccggcgccgaa
ttcggcgcgttgcgcgactccgtcgcagccaaactggtgccgacgacgctcgacgtcgtc
ggccgcgtcgagcgcgtcttgaccgcggcgcacgcggcgcaggttgcgttgcccgacaag
ccttctgcgctgcaggccgacgctgtcgctgatattcgcgcgcagttggcccggctgctg
cctgtcgggttcgtcgccgcgacgggcgtcagccacctggctgatctgacccggtacctg
acggccgtcggccgccggctggagcggttaccccaggcgccggccgcggaccgcgagcgc
atggaccgcatccacgccgtcgaggacgcgtatgacgaattgcggcaggcactttcgccg
ttgcgatgccagggcgaagacgtccgcgacatcgcccggcagatcgaggagctgcgtgtc
agcctgtgggcccagcagttgggcaccccgaggccggtcagcgagcaacggattcaccgg
gcgatcgacgccatcgtcccgtga
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