Methylobacterium phyllosphaerae: MCBMB27_02886
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Entry
MCBMB27_02886 CDS
T04968
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshB
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mphy
Methylobacterium phyllosphaerae
Pathway
mphy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mphy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCBMB27_02886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mphy03019
]
MCBMB27_02886
03009 Ribosome biogenesis [BR:
mphy03009
]
MCBMB27_02886
Enzymes [BR:
mphy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MCBMB27_02886
Messenger RNA biogenesis [BR:
mphy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MCBMB27_02886
Ribosome biogenesis [BR:
mphy03009
]
Prokaryotic type
rRNA helicases
MCBMB27_02886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
APT32177
UniProt:
A0AAE8HVL9
LinkDB
All DBs
Position
complement(3069980..3071731)
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AA seq
583 aa
AA seq
DB search
MPFPTLPAPLARALSDRGYADPTPVQAAVLEAAAGSRDLLVSAQTGSGKTVAYGLAMASI
LIGEADQLPPPAAPLALVIAPTRELALQVQRELSWLYGPAGGRVAACVGGMDPRRESRML
AEGTHIVVGTPGRLRDHLERRNLDPTALRAVVLDEADEMLDLGFREDIEFILSATPPERA
TYLFSATLPKAIETLAERYQHGALRLAIKGETKGHADIAYRAVRIMPRETEHVVLNLLRE
ADAATAIVFCNTRNAVRHLQASLTERGFSVVALSGELGQGERNAALQALRDGRARVCVAT
DVAARGIDLPSLSLVIHADLPHDAEVLQHRSGRTGRAGRKGTSVLLIPNSRRRRAEQMFA
IAKVSPEWSGPPSADEIRRLDGERMLSDPLFAEPPAEEDVALAETLLAGKSPEELAALLA
RVYRTRLPAPEEVSDPGEGRAPRGERPPYDPMDPERIAAMGPAVWFRLNLGRRDNADPRR
LLPMLTRRGGIGRQEIGAIRIFDRETKFEVRGNAAARFAEAFARNGSPDIQVEALVGDAG
PDERRDRPGGPKGFASPRAGKHQRKVDRTGPKSDKAGRHSGRA
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
ttgcctttcccgaccctgcccgcccccctcgcgcgggccctgagcgaccgcggctatgcc
gatccgaccccggtccaggccgccgtgcttgaggccgccgccggctcccgcgacctcctc
gtctcggcccagaccggctccggcaagaccgtggcctacggcctcgccatggccagtatc
ctgatcggggaggccgaccagttgccgcccccggcggcgcccctggccctcgtgatcgcc
ccgacccgggaactcgccctgcaggtgcagcgcgagctgtcctggctgtacggacccgcc
ggcggccgcgtcgcggcctgcgtcggcggcatggacccgcgccgggaaagccggatgctg
gcggagggcacccacatcgtggtgggcacgccggggcgcctgcgcgatcacctcgagcgc
cgcaacctcgacccgacggccctgcgggccgtggtcctcgacgaggccgacgagatgctc
gatctcggcttccgggaggatatcgagttcatcctctcggcgacgccgccggagcgggcc
acctacctgttctccgcgaccctgccgaaggcgatcgagacgctggccgagcgctaccag
cacggcgcgctccgtctggcgatcaagggcgaaaccaagggacatgccgacatcgcctac
cgggcggtgcggatcatgccgcgggagaccgagcacgtcgtgctcaacctcctgcgcgag
gccgatgccgcgaccgcgatcgtcttctgcaacacccgcaacgccgtccgccatctccag
gccagcctgaccgagcggggtttctccgtggtggcgctgtcgggcgaactcggccagggc
gagcgcaatgccgcgcttcaggccctgcgcgacggccgcgcccgggtctgcgtcgccacc
gacgtggccgcccgcggcatcgacctgccgtccctgagcctcgtcatccacgcggacctg
ccgcacgatgccgaggtgctccagcaccgcagcggccgtaccggtcgcgccggccgcaaa
ggcacctcggtgctgctcatccccaattcccggcgacgccgcgccgagcagatgttcgcc
attgccaaggtgagccccgaatggtcggggccgccctcggccgacgagatccggcgcctc
gacggcgagcgcatgctctcggatccgctcttcgccgagccgcccgccgaggaggatgtc
gcgctcgccgagacgctgctcgccggcaagagcccggaggaactggctgccctgctggcc
cgcgtctaccgcacccgcctgccggctcccgaagaggtcagcgatcccggagagggccgc
gctccccggggcgagcggccgccctacgacccgatggatccggagcggatcgccgccatg
gggccggccgtctggttccgcctcaacctcggccgccgcgacaacgccgacccgcgccgt
ctgctgccgatgctgacccggcggggcggcatcgggcgccaggagatcggtgcgatccgg
atcttcgaccgcgagaccaagttcgaggtgcggggcaacgcggcggcacgctttgccgaa
gcgttcgcccggaacggctcgccggatatccaggtcgaggcgctggtgggcgatgcgggg
ccggatgagcgcagggaccgaccgggtggtccgaagggttttgcgagcccgcgcgccggg
aagcaccagcgcaaggtggatcgcaccgggccgaagagcgataaggccgggcgccattcc
ggacgggcctga
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