Methylobacterium phyllosphaerae: MCBMB27_03288
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Entry
MCBMB27_03288 CDS
T04968
Name
(GenBank) ATP-dependent RNA helicase DBP4
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mphy
Methylobacterium phyllosphaerae
Pathway
mphy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mphy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCBMB27_03288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mphy03019
]
MCBMB27_03288
Enzymes [BR:
mphy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MCBMB27_03288
Messenger RNA biogenesis [BR:
mphy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MCBMB27_03288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_30
Utp25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
APT32579
UniProt:
A0AAE8HWH3
LinkDB
All DBs
Position
3505086..3506636
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AA seq
516 aa
AA seq
DB search
MTQFTDFGLAQPVLRALSEAGYVAPTPIQAQAIPPAMEGRDLCGIAQTGTGKTAAFALPI
LHRLSLSDRRAPRRGCRVLVLSPTRELANQIAESFSDYGRHLSFTNTVVFGGVTISRQER
ALAPGVDILVATPGRLIDLIERRSLILDGVEILVLDEADQMLDLGFIHALKRIVKMLPEK
RQSLFFSATMPKNIAGLAAQYLTNPVQVAVTPVATTAERVDQQVIFVHTGAKQALLGHIL
RDPAIERVLVFTRTKHGADRVVRGLDKVGIAAAAIHGNKSQPQRERALASFKDGSCRVLV
ATDIAARGIDVEGVSHVVNFDLPNVPESYVHRIGRTARAGADGLAISFCNDEEKAYLRDI
ERVTRQKVPVAGFPEGFTPPSRQEAAEIAREEERRPERQQQRPGGGRQGQRPRQSQGRPQ
QGRPEGGRGFGGPGQGAPRQGRPQEGRADARGDGRGHAPQGRDVRADRPARPQGERPNQG
RPNRDARPQRADARPRSGGGGGEGRSIGWLERAPRS
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
ttgacccaattcaccgatttcggcctcgcccagcccgtgctgcgggcgctcagcgaggcc
ggctacgtcgcgccgaccccgatccaggcccaggcgatcccgcccgccatggaaggccgc
gacctctgcggcatcgcccagaccggcaccggcaagaccgcggccttcgcgctgccgatc
ctgcaccgcctctcgctctcggaccgccgcgcgccgcgccgcggctgccgggtgctggtg
ctctcgcccacccgcgagctcgccaaccagatcgccgaatccttctcggattacggccgt
cacctgtccttcaccaacacggtggtgttcggcggcgtcaccatcagccggcaggagcgc
gccctggcgccgggcgtcgacatcctcgtcgccacccccggccggctgatcgacctgatc
gagcgtcgctcactgatcctcgacggcgtggagattctcgtcctcgacgaagccgatcag
atgctcgacctcggcttcatccacgccctcaagcgcatcgtgaagatgctgcccgagaag
cgccagagcctgttcttctcggcgaccatgccgaagaatatcgccggcctcgcggcgcag
tacctcaccaatccggtccaggtcgcggtgacgcccgtcgccaccacggcggagcgggtc
gaccagcaggtgatcttcgtccacaccggcgccaagcaggcgctgctcggccacatcctg
cgcgatccggcgatcgaacgcgtcctggtcttcacccgcaccaagcacggcgccgaccgc
gtcgtccgcgggctcgacaaggtcggcatcgcggcggcggccatccacggcaacaagagc
cagccgcagcgcgagcgggcgctggcgtccttcaaggacggctcctgccgggttctggtc
gccaccgacatcgcggcccgcggcatcgacgtcgagggcgtgagccacgtggtcaatttc
gacctgccgaacgtgccggagagctacgtccaccggatcggccgcaccgcccgggccggc
gcggacgggctcgccatctcgttctgcaacgacgaggagaaggcctacctgcgcgacatc
gagcgggtgacccggcagaaggtgccggtggcgggcttccccgagggcttcaccccgccg
tcccgccaggaggcggccgagatcgcccgcgaggaggagcgccggcccgaacggcagcag
cagcgtcccggcggcggccgccagggtcagcggccccggcagtcgcagggccgtccccag
cagggtcggccggagggtggccgcggcttcggcggtcccggccagggtgcgccccggcag
ggccggccccaggaaggccgggccgacgcccgcggcgacgggcggggtcatgccccgcag
ggccgcgatgtccgcgccgaccggccggcacgaccgcagggcgagcgccccaaccagggc
cgtccgaatcgcgacgcccggccccagcgggccgatgcccggccgcgcagcggcgggggc
ggcggcgagggtcgcagcatcggctggttggagcgggcgccccgctcctga
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