Methanolacinia petrolearia: Mpet_1236
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Entry
Mpet_1236 CDS
T01312
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
mpi
Methanolacinia petrolearia
Pathway
mpi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mpet_1236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpi03400
]
Mpet_1236
DNA repair and recombination proteins [BR:
mpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Mpet_1236
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Mpet_1236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
P-loop_SecA
AAA_22
T2SSE
Motif
Other DBs
NCBI-ProteinID:
ADN35997
UniProt:
E1RDP4
LinkDB
All DBs
Position
1270150..1272120
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AA seq
656 aa
AA seq
DB search
MKTEKKFKLVSDFAPAGSQPEAIKELDEGLNKGERFQTLLGVTGSGKTFTIANVIEYYQK
PVLVLAHNKTLAAQLYNEFKEFFPGNRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPK
IEQMRLAATASLLSRTDVIVVASVSAIYGLGNPENFENLGFELKAGDRIKRNDLLMKLVD
ILFERNDTELMPGRFRVRGDTIDLIPGYFNNIIRIEMFGDEIERISEVDKNTGDILEPMK
YFFVYPARHYVIPEEEKAAAIEAIKAELEERLPLLGPLEAHRLKQRTLYDMEMIEETGSC
KGIENYSRHFDRRAEGEKPFCLLDYFPDDFLLVVDESHQTLPQVRGMYNGDRSRKIPLVD
YGFRLPSAFDNRPLVFNEFEEYMRHVIFVSATPGIYEEEHSLNVVEQIIRPTGLVDPLVE
IRPVRGQMADVLEEIRKTTEKGDRVLITTLTKKLAEELTEFLASKKIKTRYLHSDIKTIE
RTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDSRSLIQIIGRAAR
NANSYVVLYADNMTDSIKKAVSETERRRNMQLEFNKAHGIVPVTIKKPVREKEIDIKDIK
HIPKAEIPNLIIELEADMDAAAEALDFERAIVLRDRIRQLSEEAEEGGGKKKGRRY
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgaagactgaaaagaaatttaagctggtatctgatttcgctccggccggttcgcagccg
gaagcgatcaaagaactcgatgaagggctgaataaaggcgagaggttccagacccttctc
ggggttaccggttcgggaaagacgtttaccattgccaacgttatcgagtattaccagaag
ccagttcttgttcttgcgcacaacaagacccttgccgcacagctctacaacgagtttaag
gagttcttcccagggaacagggtggaatatttcgtttcatattatgattattaccagccg
gaatcgtatatcccgcagaaggaccagtatattgagaaggatgcgcagatcaacccgaag
atcgagcagatgaggcttgccgcgactgcgtccctactgtcgagaacggatgttatcgtt
gtcgcctccgtctcggcgatatacggtctcggcaatccggagaacttcgagaatctcggg
ttcgagcttaaggccggtgaccggataaaaaggaacgatctcctgatgaaacttgtcgat
atcctcttcgaacgaaacgataccgaactgatgccgggccggttcagggtccgaggggat
acgatcgacctgatacccggttatttcaacaacatcatccgtatcgagatgttcggcgac
gagatcgagcggatatccgaggtggacaagaataccggggatatccttgaacctatgaag
tatttcttcgtctatccggcccgccattatgtcatccccgaggaggagaaggccgcggcg
atcgaggcgataaaagcggagcttgaggagagacttcctttgctcggaccgctggaggca
catcgtcttaagcagaggactctttacgacatggagatgatcgaggagacgggatcgtgc
aagggtatagagaactattcgcggcattttgacaggcgggccgagggcgagaaaccgttc
tgcctgctcgactacttccctgatgatttcctactcgtcgtagacgagagccaccagacg
ctcccgcaggtcagggggatgtacaacggtgaccggtcaagaaagatcccgctcgtcgat
tacggtttcaggcttccttcggcatttgacaaccgccctctcgtctttaatgaattcgag
gagtacatgaggcacgtgatcttcgtatcggcgacgccgggtatatacgaggaggaacat
tcgctgaacgtcgtggagcagatcatacgtcctacaggacttgtggacccgcttgtcgag
atcaggccggtaagaggccagatggccgatgtgcttgaagagatccggaagacaactgag
aaaggcgaccgggtgctgatcaccacactgacaaagaagctcgccgaagaactgaccgaa
ttccttgcatcgaagaagataaagacacggtatcttcattcggatatcaagaccatagag
aggaccgagatcatcagggagctccgcctgggaaagttcgacgtgctggtcggaatcaat
ctgctcagggaaggtctcgacatcccggaagtaggattcatcggaatactcgatgccgac
aaggaaggcttccttcgtgattcgaggagcctgatccagatcatcgggcgtgcggcaaga
aatgccaactcgtatgtcgtcctgtatgctgacaatatgaccgattcgattaagaaggcg
gtatccgagaccgagcgccgcaggaatatgcagctcgagttcaacaaagctcacgggatt
gtgcctgttacgattaagaaaccggtgagggagaaagagattgacataaaggatatcaaa
cacatcccgaaggccgagattccgaacctgattatcgagctcgaggccgatatggatgcg
gctgccgaagcgctcgatttcgagagagcgatcgtgcttagggacaggatcaggcagcta
agtgaagaggcggaagaaggcggcgggaagaaaaaaggaaggcgttattaa
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