Methylophaga pinxianii: LGT42_005395
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Entry
LGT42_005395 CDS
T08312
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mpin
Methylophaga pinxianii
Pathway
mpin03420
Nucleotide excision repair
mpin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LGT42_005395 (uvrD)
03430 Mismatch repair
LGT42_005395 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpin03400
]
LGT42_005395 (uvrD)
Enzymes [BR:
mpin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LGT42_005395 (uvrD)
DNA repair and recombination proteins [BR:
mpin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LGT42_005395 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
LGT42_005395 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_11
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
UPH46721
LinkDB
All DBs
Position
complement(1110108..1112270)
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AA seq
720 aa
AA seq
DB search
MDVSELLNDLNKPQREAVAAPLGHTRILAGAGSGKTRVLVHRIAWLIQAENLSPANILAV
TFTNKAAAEMRGRIEQMLGYPIGGMWVGTFHGLAHRLLRSHWQEAGLPQGFQILDSDDQL
RMIKRIIRGMSLDEAQWPPKQAQWYINGQKDEGLRAAHLQAGDDPYSQNMLAIYLAYEQA
CERAGVVDFGELLLRSHELWLRRPDILAHYQQRFSQILVDEFQDTNTIQYAWIRVLAGQT
GHLFIVGDDDQSIYGWRGAKIENIQKFHKDYPDANTVRLEQNYRSTGNILAAANAVIANN
SERLGKELWTEDADGEPIQLYNAYNERDEAAYLVQEVRNWMNQGGQRSDVAVLYRSNAQS
RVIEEALMQSAVPYRVYGGLRFFERAEIKDVLSYLRLISNRRDDAAFERVVNTPTRGIGA
ATLTQLRQYARETNQSMWQSAIDFLQQKVLPARASNALSAFLTLIDSLTPEDDSMSLHEL
TGLVIDESGLRAHFAKDKTEKGQGRIENMDELINATREFMRSDDEEEMPLLDAFLAHAAL
EAGENQGDQWQDCVQLMTLHSAKGLEFPIVFMVGMEEGLFPGQKSSDDPLRLAEERRLCY
VGMTRARKTLYLLYTESRYLYGQEMHPRPSRFLSELPVERVHQVRSQQNMAASGLTALAS
RSQSADDNGFRTGQQVMHQKFGQGVIIDTEGNGSHARVHVNFKQAGSKWLVLAYANLETL
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggatgtatctgaactactaaatgatctgaacaaacctcaacgtgaagccgttgccgca
ccgcttggccatacccggattcttgctggagccggcagtggtaaaacccgcgttctggtt
catcggattgcctggctgattcaagcagaaaacttatctcctgccaatatactggcagtg
acctttaccaataaagccgcggccgaaatgcgtggtcgtatcgagcaaatgctgggttat
ccgattggtggaatgtgggtcggcacttttcatggcttagcacatcgcttattacgttct
cattggcaagaggcgggattgccccagggctttcaaattctcgacagtgatgatcagtta
cggatgattaaacgtatcattcgcggtatgtcgctggatgaggcgcagtggcccccgaaa
caagcgcagtggtatatcaacgggcagaaagacgaaggattgcgtgctgcacacctccaa
gccggagacgatccttattcgcaaaatatgttggcgatttatctggcttatgagcaagcc
tgcgagcgtgccggtgtagtagacttcggggagttactcttgcgcagtcacgagttatgg
ctgagaagacccgatattctggcgcactatcaacaacgtttttctcaaattctggttgat
gagtttcaggataccaacactattcaatatgcgtggataagagtattggccggccagacc
ggacacttattcatagtcggtgatgatgatcagtccatttatggttggcgcggtgccaaa
attgagaatattcagaaatttcataaagattaccctgacgcgaacaccgtccggttagaa
cagaattatcgttctaccggtaatattcttgctgctgccaatgctgttattgccaataat
agtgagcgtctgggcaaggaattatggactgaagatgctgatggtgaacccattcagctc
tacaatgcatacaacgaacgtgatgaagctgcctacctggttcaggaagtacgcaattgg
atgaatcagggcggacaacgcagcgatgtggcagtgttatatcgatccaatgcgcaatca
cgggtcattgaagaagccttaatgcaatcagctgtgccttatcgagtgtatggtggcctg
cgcttttttgaacgtgctgaaataaaggatgtgctgtcttatcttagattgatcagtaat
cgccgcgatgatgcagcatttgagcgtgtggtcaacacaccaacacgcggcatcggtgct
gcaacacttacccaattacggcaatatgcacgtgaaaccaatcagtcaatgtggcaatct
gctatcgactttttacagcaaaaagttttacccgcgcgtgccagtaacgccttgtcggct
tttttgacattaattgattcactaacgccagaagatgacagcatgtcattacatgaactc
acaggcttagtcattgatgaaagtggtctgcgcgcccattttgccaaggataaaaccgaa
aagggtcagggtcgcattgaaaatatggatgaactgatcaacgctacccgtgaatttatg
cgttccgatgatgaagaggaaatgcccctactcgatgcgtttcttgcgcatgccgccctg
gaagcgggtgaaaatcagggagatcaatggcaggattgcgtgcagctaatgactttgcac
tcagctaaaggcctcgaatttccaattgtctttatggtgggcatggaggaaggattgttc
ccaggccaaaagtcatcagatgatcctctcagactcgctgaagagcggcggctttgttat
gtcggtatgacacgagcccgtaaaaccctttacctgctgtatacagaatcacgttattta
tatgggcaggaaatgcatccccggccatcacgctttctcagcgaacttccagttgagcgg
gttcaccaggtacggtcgcaacaaaatatggctgcctccggtctcacagcacttgccagt
cgcagccaatcggctgatgataatggattcagaactggacagcaggtgatgcaccagaaa
tttggccaaggcgtcattattgacacagagggcaacggtagccacgctcgggttcatgtg
aatttcaaacaagctggaagcaaatggctggttttggcctacgccaaccttgaaaccttg
taa
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