Methylophaga pinxianii: LGT42_005405
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Entry
LGT42_005405 CDS
T08312
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
mpin
Methylophaga pinxianii
Pathway
mpin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGT42_005405 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpin03019
]
LGT42_005405 (rhlB)
Enzymes [BR:
mpin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LGT42_005405 (rhlB)
Messenger RNA biogenesis [BR:
mpin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LGT42_005405 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Amidohydro_2
Motif
Other DBs
NCBI-ProteinID:
UPH46723
LinkDB
All DBs
Position
1112824..1114140
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AA seq
438 aa
AA seq
DB search
MSAHLTDTAFSSLPLHPLLQKGLQQAGFEFCTPIQAKSLPLLLANHDVAGQAQTGTGKTI
AFLLATFQRLLATQDAQNIVTKQPRALILAPTRELAIQIVKDAELLNSHAGLRIVIAHGG
KDYQRQRDAINEGCDVLIGTPGRLLDFHKQRVFNLNSVEVVVLDEADRMFDLGFIKDVRF
FLRRLPSPEKRLGMLFSATLSYKVTELAYEHMNNPEKVQVEPEKMMGDRIEEWVYYPSNE
EKIPLLLALIKRIQPLRSIVFVNTKQVAERVWGYLEGNGYKAALLSGDVPQKKRESLLKH
FQDGDFPYLVATDVAARGLHIPEVSHVFNFDLPQDAEDYVHRTGRTARAGASGIAISLAC
EEYAFSLPDIEQYIKHKLPVAQSSDEQLETPQPRVKAERNPAPRHRDKPRGDSSKDKRPR
RNKRSSGPAKPVNSDANQ
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctcacctcaccgacacggcattttcatcgctgccactccatcctctcctgcag
aaaggcttgcagcaagccggctttgaattttgtacaccgatacaggctaaatctttaccg
ctattgctggcaaaccacgatgtcgcgggtcaggcccaaaccggtacaggtaaaaccatt
gcctttttattagccacttttcaacgtttactcgcgactcaggatgcgcaaaatattgta
acaaagcaacctcgcgcacttattttggcacccactcgagagttggcaattcagattgtt
aaagatgccgaattattaaatagccatgccggattgcgcattgttatcgcgcatggcgga
aaagattatcaacgtcagcgcgatgctatcaacgagggttgtgatgtattaattgggaca
ccgggacgtttgctggattttcataaacaacgtgtctttaacctcaatagtgttgaagtc
gtggtactggatgaggccgacagaatgtttgatcttggctttattaaggatgtgcgtttt
tttctgcgtcggttgcccagtccggaaaagcgtttaggcatgctgttttctgccacatta
agttacaaagtaactgaactcgcatatgagcatatgaacaatccggaaaaagtgcaggtt
gagccggaaaaaatgatgggggatcgaattgaagagtgggtgtattacccatctaatgaa
gaaaagataccgcttctgttagccttgattaaacgcatccagcccttacgcagtattgtt
tttgttaatacaaaacaagttgctgagcgagtatggggttatctggaaggcaatggctac
aaagcggcattattatccggggatgtgccacagaagaaacgtgaaagtttattgaaacat
tttcaggatggtgattttccctatctggtggctactgacgtggctgcacgtggcttgcac
attccggaagtcagccacgtctttaattttgatttaccgcaagatgcagaagattatgtg
catcgtacaggacgaaccgcccgcgctggggccagtggtatcgcgattagtctggcctgt
gaggaatatgcgttttcgttgcccgatattgagcaatatatcaaacataaattgccagta
gcacaaagctcggatgagcaactggaaaccccgcagcctagagttaaagccgaacggaat
cctgcgccacgccatcgtgataaaccacgtggcgacagtagtaaagataagcgacctcgc
cgcaacaaacgatccagcgggccagctaaaccggtaaactcggatgcaaatcaatag
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