Methylophaga pinxianii: LGT42_006250
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Entry
LGT42_006250 CDS
T08312
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
mpin
Methylophaga pinxianii
Pathway
mpin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mpin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LGT42_006250 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpin03400
]
LGT42_006250 (recC)
Enzymes [BR:
mpin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LGT42_006250 (recC)
DNA repair and recombination proteins [BR:
mpin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LGT42_006250 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
CBM_5_12_2
Motif
Other DBs
NCBI-ProteinID:
UPH46884
LinkDB
All DBs
Position
1280751..1283951
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AA seq
1066 aa
AA seq
DB search
MLKVIYSNSMSQLAAHLAETQQQNPLPPLQAETIMVQSNELARWLNLFLASNQSIAAHLE
FPFPSAWLWKLFRKVWPDIPRESPYSTDAMSLKIFELLPTIKKQPEFEAIGRYLGETDDS
RKMLDLAQRIADSFDQYLMYRPDWIAQWESGKAGNWQGALWQLLTQADPEPMHRARLLQK
MQKAFKNKEFPTSILPPRIAVFGLTAMPPVYLDLLAQIAEFTEISIYFLSPSEGYWGDLV
NQKSQAKQRLLFDDENEFTTNGHPLLASLGKLGQTFFEQLQAMPHEAEMFYLEPEANDLL
SQLKQDIYQLDTDNEKLTVSTDDDSVQVHSCHSALREAEVLHDQLLNLFEKYPELSPTDV
VVMTPDIEKYAPAIDAVFSSQPVERYIPFSIANRGDAQQQTLISAFTDLLALPQSRFDAE
TIMRLLECPAIQRQFNLDHTSLDVIRDWLRETHIRWGLDAHDKQKLGLAPLDANTWRAGL
DRLLLGYALPPAERDQWQLFNHQLPVSGISGDRAQLMAQLNSFIEQLGQLRDVLNRPRNP
IDWQMVLTDWLRRLFSIGDENEQLQLDAVLKGINSLTEAALQVDFVQTLSIDLVRDWLSL
HIELPGAEHQFMGRGLTFCDMVPMRSIPFDVVCLIGMNDNSYPRRQPKPGFDLLSSDYRP
GDRSRRDDDRYLFLEAILSANRHLYISYVGASIHDNSLIPPSVLVSDFADVLSRRFQTIE
GGEIWEQLLTQHPLQAFSTRYFSGQDSALFSFNAEACPPPQKQVDRENWFDTTLPEADES
WRFVSLKQLIQFFSHPAKYLAQQRLGIFYESDDATLEIREPFVLDGLEAWSIRQQMLDGR
LAKMQQEQIQPVINASGILPHGHFGELLFEQQLETVDAFTERLQPLRTAEPLAPLAFEFD
CEDFTLIGQLEGLSTAGLLHYRLAKMKAKDLLGVWCSHLVLNCLRPQGVALQSQLQCEDN
YVLLQPVEQPEQYLADLLAIYWQGIHQPVPFLPKTSLAYASAELNAGKADPEKEAFKAWT
SGFTAGEDADPYHQLLFTQSPLTDEFQRLSLRIYQPVWDAMEGDKL
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaagtgatctacagcaattcgatgtcgcagctggccgcacatctggctgaaacc
caacaacagaatcctttaccaccattacaggctgaaacgataatggtgcagagtaatgag
ttggcgcgctggcttaatctcttcctcgcttccaaccaatcgatcgcagcacatcttgag
tttccatttccatcggcctggttgtggaagttatttcgcaaggtctggccggatatcccg
cgtgagtcaccttattcgactgatgcaatgagtctgaaaattttcgaattgttgccaacg
atcaaaaaacagcccgagtttgaagcgatcggtcgctaccttggtgagactgatgactca
cgtaaaatgctggatctggcacaacggattgccgatagttttgaccagtatctgatgtat
cgcccggattggatcgcgcaatgggaatcagggaaagcgggcaattggcaaggtgcttta
tggcaattgcttacgcaggctgaccctgaaccgatgcatcgggcgcgtttactgcagaag
atgcaaaaagccttcaaaaacaaagagtttccaacctccatcttaccgcctcgaatcgct
gtctttggactcacagcgatgccacctgtttatctggatttgctggcacaaattgctgag
tttaccgagatttcaatttattttctgtcacccagtgaggggtattggggagatctggtt
aatcagaaatctcaggcaaaacaacgtttgttatttgatgacgaaaatgaattcacgact
aacgggcacccgttactggctagtctgggaaagcttggtcaaaccttttttgaacagcta
caggcgatgcctcatgaagccgaaatgttttatcttgagcccgaggccaacgatttactc
agccagttgaaacaggatatttatcaactcgataccgataatgagaagctgacggtctcg
accgatgatgattcagttcaggttcacagctgtcacagtgctctgcgtgaagcagaagtc
ctacacgatcaattactcaacctgtttgaaaaatatcccgagttatcgcctaccgatgtg
gtagtgatgactccggatattgaaaaatacgcgcctgcgatagacgccgtattcagcagt
cagccggttgagcgatatattcctttcagcattgccaatcgcggtgatgcacaacagcaa
acgctgatttcggcatttacagatttactggcattgcctcaatcccggtttgatgctgaa
accattatgcgtttgctggaatgtccggcgattcaacgtcagttcaacctggatcacact
tcattggatgtgattcgtgattggctacgagaaacccatattcgctggggattagacgct
cacgataaacaaaagctgggccttgcgcctttggatgccaacacctggcgagctggtctt
gatcgattattgctgggatatgcactgcctccagcggaacgtgatcaatggcagttgttt
aaccatcaacttcctgtcagtggtatttccggtgatcgggctcaactcatggcacagcta
aatagctttatcgagcagctggggcagctgcgtgacgtgcttaacagacctcgtaatccc
atcgattggcaaatggtgttgactgattggctacgccggttattcagcataggtgatgaa
aacgaacagttacagcttgatgcagtgttaaagggcatcaattcattaaccgaagctgct
ttgcaagtggattttgtacagaccttatccattgatttagtgcgtgactggttgagtttg
catatcgaactgccgggggccgagcaccagtttatgggacgaggtcttactttctgtgac
atggtgccaatgcgcagtattccgtttgatgtggtctgcctgattggtatgaatgacaac
agttatccgcggcgccagcctaaacccggatttgatctgctttccagtgattatcgaccg
ggtgaccgttcaagacgtgatgatgatcgttatctgtttctggaagctattctgtcagct
aaccggcatttgtatatcagttatgtgggggccagcattcatgataattcgctgatacca
ccgtcggtgttggtcagtgattttgccgatgtgttaagtcgccgttttcagactattgag
ggtggtgagatctgggagcagttacttacccagcatcccttgcaggctttcagcacacga
tatttttccggacaggatagtgcacttttcagttttaacgctgaagcctgtccgcctccg
caaaagcaggttgaccgcgagaactggtttgatacgacattgcctgaagccgatgaaagc
tggcggtttgtcagcctcaagcagttaatacagtttttcagtcatccggcaaagtatttg
gcacaacaacgcttaggcatattttatgaaagtgatgatgccacactggagatccgcgaa
ccttttgtgctggacgggcttgaggcctggtcaatacgccagcagatgctggatggtcgt
ttagcaaaaatgcagcaggaacagatccagccggttataaatgccagcggcatattaccg
cacggccattttggtgagctgttattcgaacagcagctggaaaccgtcgatgcgtttact
gaaagactccagccattaagaacggctgagccgttggcaccactggcatttgagtttgat
tgtgaggactttacgcttataggccaacttgaaggcctctccacagctggacttttacat
tatcgactggccaaaatgaaagccaaagatttgctgggagtgtggtgttcgcatttggtg
ctcaattgtctcagaccgcaaggcgtggcattacaaagccaactgcaatgtgaagacaac
tatgttttgctgcagcccgtggagcagccagaacaatatctggcagatttattggccatc
tactggcagggcatacatcaacctgtgccgtttttaccgaaaaccagcctggcttatgct
tcagctgaattgaatgccggtaaagctgatccggaaaaagaagccttcaaggcctggacg
tccgggtttactgcaggtgaggatgccgatccctatcatcaattattatttacgcagtca
ccgttaaccgatgaattccaacgtttaagtttgcgtatttatcaacctgtctgggatgcc
atggagggagacaaactatga
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