Methylophaga pinxianii: LGT42_006560
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Entry
LGT42_006560 CDS
T08312
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpin
Methylophaga pinxianii
Pathway
mpin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LGT42_006560 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpin03400
]
LGT42_006560 (mfd)
Enzymes [BR:
mpin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LGT42_006560 (mfd)
DNA repair and recombination proteins [BR:
mpin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LGT42_006560 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
T1R_D3-like
Motif
Other DBs
NCBI-ProteinID:
UPH46944
LinkDB
All DBs
Position
complement(1349175..1352633)
Genome browser
AA seq
1152 aa
AA seq
DB search
MPANLLQPVLPASAKNQLRAGQLYGSAQGLLLAKAAQQHEGPLLVVTDDVASAHRLELEI
RFYLGQAELPILHFPDWETLPYDSFSPHQDIVSERLQTLHHLPGFKRGILLVPIATLMQR
IAPRAFLDGNHLELKIGDQFDIEQWRLKLEKSGYRNVAQVIEHGEFAVRGAIIDLFPMGS
RQPYRIDLFDDEIDTLRTFDPETQRSIDNIDQIHLLPAREFPVNDDSIALFRKQFRQYFD
GDPQRSLIYREVSAGNMPGGIEFYLPLFFEQTARLTDYLPDNTLLVQLNDTVHAAEQFWQ
EIQIRYRQHSVDPERPLLPPVNVFVPVDELFGQFKQWQRLQCQNFELDDSAGNSNYATVM
PPSLPLNSKQDRPCEALHQFIDKFAGRILIAAESAGRRETLLDLLRKNQLQPKVVDNWDA
FIKDSAPLCITVAPLEQGLLLQIENIAVVAETQLFGQQVMQRRRRSRKKRDSDAIIRNLA
ELTVGDAVVHEDHGVGRYLGLQTLDVGDVATEYVTLEYAKGDKLYVPVASLDLISRYSGS
APELAPLHQLGTTQWEKARRRAAEKVRDVAAELLDIYAKRAANKKPPMQSPDEQYEAFSA
AFPFETTPDQQDAIDAVIADMQSETPMDRLVCGDVGFGKTEVAMRAAFLAVQSGKQVLVL
VPTTLLAQQHYENFKDRFADWPIRVEVLSRFRSKKQLDDVKSAISDGTADIVIGTHKLLQ
QDIDPKRLGLFILDEEHRFGVTQKEQLKKYRAQIDVLTLTATPIPRTLNMSISGIRDLSI
IATAPARRLAIKTFVLQWNADKIREGMLREIKRGGQVYFLHNKVEDIDRVARELETLMPE
ARIAVAHGQMRERELEQVMLDFYHQRFNVLVCTTIIETGIDVPSANTIFIDRADKLGLAQ
LYQIRGRVGRSHHRAYAYLITPPQQAMTADAIKRLEAIESIEDLGAGFTLATHDMEIRGA
GELLGDEQSGQMQEIGFTLYNELLERAVNALKSGKTPDLDNMARHTVEIDLHVPALIPSD
YLPDVHTRLVLYKRIAAAADKEALRELQVEMIDRFGLLPEPVQTLFAVHELRLKAKTIGI
RKIDAYDQGGRLLFDKEPQVEPMTIIQLIQKQPSRFKLDGQDKLRFTDNMPDAESRILVI
DSLLDNLLKPAA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
ttgccagccaacctgctccagcctgtcctacctgcttcagctaaaaatcaacttcgtgcc
ggacaattatacggcagtgcacaaggtttgctgttagcaaaagcagctcaacagcacgaa
ggaccactgctggtcgtcaccgacgatgtggccagtgcgcatcgactggaattggaaatc
cgcttttatcttgggcaagctgaactgccgatattacatttcccggattgggaaaccctg
ccctacgacagtttttccccgcatcaggatattgtttccgagcgcttgcagacattgcat
catctacccggttttaaacgtggcattttattagttcctattgccacattgatgcagcgt
atcgcaccaagggcatttctggatggcaatcatcttgagctgaaaatcggcgatcaattt
gatatcgaacaatggcgtctgaagctggaaaaatccggttatcgcaatgtggctcaagtg
attgaacatggtgagtttgccgttcgtggtgccatcattgatttattcccgatgggtagc
cgacagccttatcgtattgatttatttgatgacgaaattgacacgttgcgaacatttgat
ccggaaacgcagcgctccatcgacaacatcgatcagatccatctcttaccggcacgcgaa
tttccggtcaatgacgacagtattgcgctgtttcgcaaacaattcagacaatacttcgat
ggcgatccgcagcgcagtctgatttatcgtgaagtcagtgccgggaatatgccgggtggt
atcgagttttacctgccgttgttttttgaacaaaccgcccgcctgaccgattacctgccg
gacaacacactgttagttcagctcaatgatacggttcacgccgctgagcagttctggcag
gaaatccagatccgctaccgccagcatagtgttgatccggaaagacccttactaccaccg
gtcaatgtatttgttccggtagacgaattattcggccaatttaaacaatggcagaggctg
cagtgccagaactttgaattggatgactcggcagggaacagcaattacgccacggtgatg
ccaccgtcattaccgctaaactccaagcaggatcgtccgtgtgaagcgttacaccaattt
attgataagtttgctggccgaattctgattgccgccgaatccgcaggtcgtcgtgaaacc
ctgttggatttgctgcgtaaaaatcagttgcaaccgaaagtcgtcgacaattgggatgca
tttataaaagatagcgccccgttatgtattacggtggcaccgcttgagcaaggcttgctg
ctgcagattgaaaatattgcagtggtggctgaaacacagctatttggtcagcaggttatg
caacgtcgtcgtcgcagccgtaaaaagcgtgactctgatgccatcatccgtaacctggct
gaacttaccgttggcgatgccgtagtccacgaggatcatggggtcggtcgttatctggga
ttacaaacacttgatgtcggcgatgtcgcgaccgaatacgtcacactggaatatgccaaa
ggcgacaagctgtatgtgcctgtcgcttcactcgacttaatcagtcgctactcgggatct
gctcctgaactggcaccgttacatcaactgggcaccacacaatgggaaaaagcacggcgt
cgtgcggccgagaaagtccgtgatgttgctgcagaattactcgacatttatgccaaacgt
gctgccaataaaaaaccgccgatgcagtcgcctgatgaacaatatgaagctttttcggcg
gcattcccgtttgaaaccacccccgaccagcaggatgccattgatgcggtgattgcggat
atgcaatctgaaacgcctatggatcggctggtgtgtggcgacgtcggctttggtaaaacc
gaagtcgcgatgcgcgccgccttcctggctgtgcaatcagggaaacaagtgttggtactg
gtgccaacgacactgcttgctcaacagcattatgaaaactttaaagatcgttttgccgat
tggccaatccgggttgaggtattgtctcgctttcgaagcaagaagcagctggatgatgtg
aaatcagcgatcagcgatggcactgccgacattgttatcggaacccacaaattattacag
caggatatcgaccccaaacgactgggcttattcattctcgacgaagaacatcgtttcggt
gtgactcaaaaagaacaattgaaaaaataccgagctcagatcgatgtcctcacactgacc
gcgacaccgattccacgtactttgaacatgtcgatttccggtattcgcgacttatcgatt
attgccacagcacccgctcgccgcctggcgattaaaaccttcgtattgcaatggaacgct
gacaagatccgtgaaggcatgctgcgtgaaatcaagcgtggcgggcaggtttattttctg
cataacaaagtggaagacattgatcgggtagcgcgtgaactcgaaaccttaatgccggaa
gcacgcattgcggtggctcatgggcaaatgcgtgaacgtgagctggaacaggtgatgctc
gatttttatcaccagcgctttaatgtactggtctgcaccacaattattgaaaccggtatc
gacgtgccgtccgccaataccatctttatcgatcgagccgataagttaggtttggcacag
ctctatcaaattcggggtcgtgtgggccgttcgcatcaccgtgcttatgcttatcttatt
accccgccacaacaagcaatgacggcagatgccattaagcgtctggaagccattgaatca
attgaagatttgggggcaggctttacccttgcgacccacgatatggaaattcggggtgcg
ggtgaattactgggtgacgagcaaagcggccagatgcaggaaattggctttaccttatat
aacgaactgctggaacgcgcggtcaatgcattgaaatccggtaaaaccccggatctggat
aatatggcccgccacacggtagaaatcgatctgcatgtacccgcattgattccatccgac
tatctgcccgatgtgcatactcgactggtgttatacaaacgcattgctgccgcggcagat
aaagaagccttacgcgaactgcaagtagaaatgattgatcgctttggcctgctacccgaa
ccggtgcagacgttgtttgccgtgcatgaattaaggctgaaggccaagaccatcggtatt
cgaaaaattgatgcttatgatcaaggtgggcgcttattgtttgataaagagcctcaggta
gagccgatgaccatcatccagctgattcaaaagcaaccatcccgattcaaactggacggt
caggataaattgcgctttaccgacaatatgcccgacgccgaaagtcgcattctggtcatt
gattcattgttggataatctgctcaagccggccgcctga
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