Methylophaga pinxianii: LGT42_007050
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Entry
LGT42_007050 CDS
T08312
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
mpin
Methylophaga pinxianii
Pathway
mpin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGT42_007050 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpin03019
]
LGT42_007050 (pcnB)
Enzymes [BR:
mpin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
LGT42_007050 (pcnB)
Messenger RNA biogenesis [BR:
mpin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LGT42_007050 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Gad2
Motif
Other DBs
NCBI-ProteinID:
UPH47027
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All DBs
Position
1456955..1458328
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AA seq
457 aa
AA seq
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MLSINSLITSFKRIKAGKKSRAAAEGAPPLIVPRADHNISRELISPSALKVLYTLKDAGY
EAYLVGGCVRDLLLGYEPKDFDISTNALPEQVHRLFRRSQLIGRRFKLVHVRFGRDEIIE
VATFRAPPEAENHVDKQGRITQDNVYGTLEQDAWRRDFTINALYYNIRDFSIVDYTGGIA
DLQAGLIRLIGDKPVRYREDPVRMLRALRFMAKLGLKLEPETEQLIVELAPLLGDIPPAR
LFDETLKLYLSGQAAVTHELLCHYGVFDHLYPQTAALLHQENHGFPRTLLMKALENTDKR
LADNKPVTPAFLFAALLWEPLRQRWLHLCKEMPEIPAMQRAAGEVLAEQIQTVAIPKRFS
LVTRDIWTMQPRLTRRQGKRAFALLLHPKFRAGYDFLALRAQSGEPLQELTEWWTIFQQA
SATTQAEMVNALGNGGETEKRKPRRRRRRKPAIKKVE
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgctttcgataaattcactcatcacctcattcaaacggatcaaagccggtaaaaaaagc
cgtgcagcagccgagggagccccaccacttattgtgcctcgtgcagatcacaatatttcc
cgtgaattaatcagccctagcgcattaaaagtactctatacccttaaagatgcaggctat
gaagcctatttagtgggtggctgtgtgcgagatttattactgggatatgaacccaaagat
ttcgatatctccaccaatgctttgccagaacaggttcatcgcttatttcgtcgaagtcag
ttaatcggccgtcgttttaaattggtacatgtacgctttggccgtgacgaaataatcgaa
gtggccactttcagagcaccacctgaagcggaaaatcatgtcgataagcaaggccgcata
acacaggataatgtctacggtaccctagagcaggatgcatggcgccgtgacttcaccatt
aatgccttgtattacaatatccgtgacttttcgattgttgattacacgggtgggattgcc
gatttgcaagcaggtttgattcgattgattggcgataagcccgttcgttatcgtgaagat
cctgtgagaatgttacgggctctccgttttatggccaaattaggtctcaaactggaaccc
gaaaccgaacagttaatcgtggagctcgcaccgctgctaggggatattccacccgcccga
ttatttgatgaaaccttgaaactctatttaagtggtcaggctgccgtcacccacgaactg
ctatgtcattacggtgtatttgatcatctttatccgcaaactgccgccttattacatcag
gaaaaccatggcttcccccgtacattactgatgaaagcgctggaaaatactgataaacga
ttagcggacaacaaaccggtgacgccggcatttctatttgctgcattattatgggagccg
cttcgccagcgttggttgcatttatgcaaagaaatgcctgaaataccagcaatgcaacgt
gctgccggtgaagtactggctgaacaaatccaaactgtcgccatccctaagcggttcagt
ctagtgacccgtgatatatggacgatgcaacccagattgactcgtcgtcagggaaagcgc
gcttttgcgttgctgttacatccaaagtttcgtgccggttatgactttctggcattacgt
gcccagtctggtgaaccacttcaggagctgacagagtggtggacaattttccagcaagcc
tcggcaacaacccaggctgaaatggtaaatgctttgggtaatggtggagaaacagaaaaa
cgcaagccacgtcgccgccgccgtcgtaaacctgctatcaaaaaagttgaataa
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