Methylophaga pinxianii: LGT42_010545
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Entry
LGT42_010545 CDS
T08312
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mpin
Methylophaga pinxianii
Pathway
mpin03030
DNA replication
mpin03430
Mismatch repair
mpin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mpin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LGT42_010545 (dnaE)
03430 Mismatch repair
LGT42_010545 (dnaE)
03440 Homologous recombination
LGT42_010545 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpin03032
]
LGT42_010545 (dnaE)
03400 DNA repair and recombination proteins [BR:
mpin03400
]
LGT42_010545 (dnaE)
Enzymes [BR:
mpin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LGT42_010545 (dnaE)
DNA replication proteins [BR:
mpin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LGT42_010545 (dnaE)
DNA repair and recombination proteins [BR:
mpin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LGT42_010545 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UPH44949
LinkDB
All DBs
Position
complement(2193737..2197222)
Genome browser
AA seq
1161 aa
AA seq
DB search
MTSPFVHLHLHTDYSLVDGLVRIKPLVKAAAASGMPAIAITDQHNLFAAVKLYSAAMQAG
VKPILGADIRLRDSNDSKKSLRMVLLCSTMEGYHNLSRLISRAYTEGQHLGVPMLEPEWL
IGQTDGLICLSGGREGLLGRDLLAGRQAEAEEQAAHWMRLFPDRFYLELIRTGRDEEERY
IQQALLLASELDLPVVATNDVRFLTPDQFEAHEAKVCINEGRLLDDPRRPRMYSEQQYLR
SPEEMVRLFADIPEAITNTVEIAKRCNVELTLGEHYLPEFPVPDGMTLAEFFSKESFEGL
AERLPILFPDETEREQKRVEYESRLQIELDVINEMGFPGYFLIVADFIRWAKNNGVPVGP
GRGSGAGSLVAYALKITDIDPLQYDLLFERFLNPERVSLPDFDVDFCMDGRDRVIDYVSR
HYGRDHVSQIITFGTMAAKAVLRDVGRVLGHPYGFVDQLAKLVPFELKMTLSKALEQEPQ
LKERYDKEEEVRNLIDLALQLEGLTRNVGKHAGGVVIAPKKLTDYTPLYCEQNGAGLVSQ
YDKDDVESVGLVKFDFLGLKTLTVIDWAVKNVKAMLPAEEADKIDIAILPLDDKPSYDLL
KRCETTAVFQLESRGMKELIKRLQPDNFEDIIALVALFRPGPLQSGMVDDFVNRKHGRAK
VDYPHPDLEPVLKPTYGVIVYQEQVMQIAQILAGYSLGGADMLRRAMGKKKPEEMAKQRQ
IFLEGAKNRGIEENTAGPIFDLMEKFAEYGFNKSHSAAYALVAYQTAWLKAHYPAAFMAA
VLSADMDNTDKVVGLIDECRDMNLTVLPPDVNFSKIQFTVENETTIRYGMGAIKGVGESA
LAGIVSEREQGEAFTSLFDFCRRVELKKINRRVMESLVKAGAFDSLGGHRASLEASLSLA
MQIAEQHRRDADSGQNDLFGLAEPSHADQPQTDLLEDVPEWQEEQLLRAEKETLGLYLSG
HPIDRYAAELAQFIPKKISELDAPESKGYQRNEIPLLTAGLIVAIRTMKSKNGSRMAFIT
LDDQTARLEVRVFGDVYEQYQSVIQPDKLVVIQGKIGQDNFSGGLAGTAESVYDLQKARE
LFGKSVQLIVKQQGEDAQWISQMQAVMSPFCGGVIPVELKYHNQDAEVLIRLGHDWQVTP
SDTLLKELADLPNSETVTVRY
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgccatttgttcatctccatttacatactgattattcccttgttgacgggctt
gtccgtattaagcctctggttaaagcggcggcagcctcaggtatgccagcgattgccatt
accgatcaacataatctgtttgctgccgtcaaactttacagtgcggctatgcaagcggga
gtcaaaccgattcttggggcagatattcggctgcgtgacagtaatgacagtaaaaaaagt
ctgcgcatggtgctgctgtgcagcaccatggagggctaccacaatctgtcacgattaatt
tccagagcgtataccgaagggcagcatcttggggtacccatgctggaacccgagtggctt
ataggtcaaaccgatggcttgatttgtctgagtggtggtcgtgaaggtctattaggccgt
gatttgctggctggtcgacaagccgaagcggaggagcaggctgcacattggatgcggttg
tttccggatcgtttttatttggagttgatccgtaccggccgtgatgaagaggaacgttat
atccaacaggcattgttactggccagtgaactcgacttgccggtagtggcgacaaacgat
gtgcgctttttaacaccggatcagtttgaagcgcatgaggccaaagtctgtattaatgag
ggccgtttgctggacgacccgcgtcgtccccgcatgtactccgaacagcaatatctgcgt
agtccagaagaaatggtgcgtttgtttgctgatattccggaagcgattaccaatacggtc
gagattgccaagcgttgtaatgtggaattaacgctgggtgaacattatttacccgagttc
ccggtgcctgacggcatgaccctggctgaatttttctccaaggaatcgttcgaggggctg
gcagaaaggttgcctatattatttccggatgaaactgagcgggaacaaaaacgggttgaa
tatgagtcccgcttacagattgagctcgatgttatcaatgaaatgggctttcctggctac
tttctgatcgttgctgactttatccgttgggccaaaaataatggtgtgccagtgggaccc
gggcggggttccggtgccggttcactggtcgcctatgcactgaaaattaccgatattgac
ccgctgcaatacgacctgctgtttgagcgatttttgaatccggaacgggtatcgttacct
gactttgacgtcgacttttgtatggatggccgtgatcgcgttatcgattatgtgtctcgt
cattatggccgggatcatgtatcgcaaatcattaccttcggtaccatggcggctaaagcg
gtattacgcgatgtgggccgtgtattggggcatccgtatgggtttgttgatcagctggcc
aaactggtgccgtttgaactgaaaatgacactgagtaaggcgctggaacaagagccgcag
ttaaaagaacgttatgacaaggaagaagaagttcgtaatttgatcgatctggcgctgcag
ctggaaggtttgacgcgaaatgtcggtaaacacgctggcggtgtggttatcgcaccaaaa
aaactgaccgattacacgccattatattgtgagcagaatggggcagggctggtatcgcaa
tatgataaagacgacgttgaaagtgttggtctggtcaaatttgactttctgggcctgaaa
accctgacggttattgactgggcggttaagaatgtcaaagcgatgttacctgcggaagaa
gccgacaaaatcgatattgcgattttgccgctggatgacaagcccagttacgacctgtta
aaacgttgtgaaactaccgcagtattccagttggaatcgcgtggtatgaaagagcttatc
aagcgactgcaaccggataattttgaagatattatcgcgttggtggcattattccgaccg
gggccgttgcaatcaggcatggtggatgactttgttaatcgtaaacatggtcgtgccaaa
gttgattatccgcatcccgatctggaacccgttctgaaacctacttatggggttatcgtt
tatcaggaacaggttatgcagatcgcccagatcctggccggatatagtctgggcggcgcc
gatatgttacgccgtgcgatgggtaagaaaaaacccgaggaaatggccaaacaacggcag
attttcctggaaggtgccaaaaatagaggtattgaggaaaatactgccggaccgattttc
gatttgatggaaaagtttgctgaatacggttttaacaaatcacattcagcagcgtatgca
ttggtggcctatcagacggcatggttgaaagcccattatccagccgcatttatggcagcc
gttttatctgctgatatggacaatactgataaagtggtcggcttgattgatgaatgtcgg
gatatgaatctgacggtattaccgccggatgttaatttcagcaaaatccagtttaccgtg
gaaaacgaaaccaccatccgttatggcatgggtgctattaaaggcgtgggtgagtcagcg
ttggcgggcatcgtatctgaacgagaacaaggagaggcctttacatccttatttgatttt
tgccgtcgggttgaactgaaaaaaatcaatcgccgggttatggaatcattagttaaagca
ggtgcgtttgactcgctgggcggacatcgtgccagtctggaagctagtcttagtctggcc
atgcaaattgccgagcaacatcggcgtgatgccgacagtggtcaaaatgatttatttggg
ctggcagaaccttctcatgccgatcaaccgcaaaccgatttgctggaagatgtgccagag
tggcaggaggagcagttattacgtgctgagaaagaaaccctagggttatatttaagcgga
cacccgattgatcgttatgctgccgagctggcccagtttattccgaaaaaaatcagtgaa
ctggacgcccctgaatccaaaggctatcaacgtaatgaaattcctttattgacggctgga
ttaattgtggcgattcgcaccatgaaatccaaaaatggcagtcgtatggcctttattacg
ctagatgatcaaacggcacggctggaagtacgtgtgtttggcgatgtgtatgaacagtat
caaagtgttatacagccggataagttggtggtgattcagggcaagattggtcaggataat
ttcagcggtggtctcgcaggcactgcagagtcggtttatgatttacagaaagcccgtgaa
ttatttggtaaatcagtgcagttgatcgtgaagcagcaaggtgaggacgcacaatggatc
tcgcagatgcaagccgtgatgtcgcctttttgtggaggtgtgattcctgtcgaactgaaa
tatcataatcaggacgctgaagtattgatccgacttggtcatgattggcaagttactccg
tcagataccctcttgaaagagctggcggatttaccaaatagtgaaactgtgacggtacgc
tattaa
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