Methylophaga pinxianii: LGT42_011550
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Entry
LGT42_011550 CDS
T08312
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mpin
Methylophaga pinxianii
Brite
KEGG Orthology (KO) [BR:
mpin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mpin03009
]
LGT42_011550 (rlmD)
Enzymes [BR:
mpin01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LGT42_011550 (rlmD)
Ribosome biogenesis [BR:
mpin03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LGT42_011550 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
RrnaAD
Methyltransf_25
TRAM
PCMT
TRM5-TYW2_MTfase
Methyltransf_15
MTS
Cons_hypoth95
Methyltransf_11
Methyltransf_23
DOT1
Methyltr_RsmB-F
PrmA
Methyltransf_12
DNA_methylase
N6_N4_Mtase
Methyltransf_4
CMAS
Motif
Other DBs
NCBI-ProteinID:
UPH45140
LinkDB
All DBs
Position
complement(2419444..2420772)
Genome browser
AA seq
442 aa
AA seq
DB search
MARRNQRQRLPTEAVQAVIESLSHDGRGIARIEGKTVFVDGALAGENVSFLYTRLHKKYD
EAKVVSVENASADRVEAKCRHFGICGGCSLMHMSPEAQLSLKQDTLKEQLSHFGQLTPEQ
WLPPLTGPLWGYRRKARLGVRYVTKKEKVLVGFREKGSPYLAELTQCEVLDPRVGLRLEE
LGKMIAELEAYNRIAQIEVAMDDANTALVFRNMDPLCETDKQKLIHYGQQNDLWIYQQPG
GPDTVTPLWPEDPQLHYAPEEGLRLEFAPGDFTQVNAGINHKMITKAIELLDLQESDRVL
DLFCGLGNFTLPLAKRVNSVIGVEGDKSLVAHAQRNAAINDLTNAEFELADLTVTQLKDY
PWAQAGFTKVLLDPPRSGAFEVLGQIADLGAETIVYVSCNPATLARDAGELVNEYGYTLV
QTGIMDMFPHTSHVESIALFKK
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggcacgacgaaatcaaagacaacgactcccaaccgaagccgttcaggcagtcatagag
agtctttcccatgatggtcgtggcatcgccagaattgaaggcaaaacggtttttgttgat
ggtgccttggctggtgaaaacgtttcttttctctatacccgattgcacaaaaaatatgac
gaagcaaaagtcgtctcggttgaaaatgcttctgctgatcgtgttgaagccaaatgtcgg
cattttggcatttgtggtggctgcagtttgatgcacatgtcgccagaagcccagctaagc
ttgaaacaagataccttaaaagaacagctatcacattttggacaactcacccctgagcag
tggttaccacctttaacaggaccgttatggggatatagacgtaaagcacgactgggcgta
cgttatgtgaccaagaaagaaaaagtactggttggatttcgggaaaaaggttctccgtat
ctggctgagttaacccaatgtgaagtgctggaccctcgcgtgggattacgtctggaagag
cttggcaaaatgattgccgagttggaagcctacaaccgtatcgctcagattgaagtcgcg
atggatgacgccaacacagccctggtatttcgcaatatggatccactgtgtgaaacagat
aaacaaaaactgattcactatggtcagcaaaacgatttatggatatatcaacaacctggc
ggaccggatacggttacgccattatggccggaagatcctcaactgcattatgcgcctgag
gagggactgagactggagtttgccccgggagattttactcaggtcaatgccgggattaat
cataaaatgattaccaaagccattgagctattggatttacaagaatcagaccgtgtactg
gatcttttttgtggcttaggtaactttacgctgccattggccaagcgagtcaacagcgtg
attggtgttgaaggcgataaatcattggttgcacatgctcaacgcaatgctgccattaat
gatctgacaaatgcagaatttgaactggcagatttgacggtcactcagttaaaagattat
ccgtgggcccaggccggttttaccaaagtattattggaccctccacggagtggcgccttt
gaagtactggggcaaattgccgatctgggggctgaaaccatcgtctatgtgtcctgtaat
ccggcaacgctggctcgtgatgcgggtgaactggtgaatgaatatggttacacactggtt
caaacgggcattatggatatgtttccacataccagccatgttgaatcaattgctttattt
aaaaaataa
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