Methylophaga pinxianii: LGT42_011945
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Entry
LGT42_011945 CDS
T08312
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mpin
Methylophaga pinxianii
Pathway
mpin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGT42_011945 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpin03019
]
LGT42_011945 (pnp)
03016 Transfer RNA biogenesis [BR:
mpin03016
]
LGT42_011945 (pnp)
Enzymes [BR:
mpin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LGT42_011945 (pnp)
Messenger RNA biogenesis [BR:
mpin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LGT42_011945 (pnp)
Transfer RNA biogenesis [BR:
mpin03016
]
Prokaryotic type
tRNA degradation factors
LGT42_011945 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
S1_RRP5
KH_2
KH-I_KHDC4-BBP
OB_PDCD11
OB_RRP5_4th
KH_NusA_2nd
S1_TP0910
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
UPH45215
LinkDB
All DBs
Position
complement(2503529..2505622)
Genome browser
AA seq
697 aa
AA seq
DB search
MNSVKKTVQFGEHILSLETGKIARQAGGSIIASLGETSVLVTVVGKKNVNPGQDFFPLTV
NYQERTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPKGFINEVQVIATVMALD
PEIDPDIPAMIGASAALAVSGIPFNGPLGAARVGYVDGNYLLNPSKKQLANSSLDLVVAG
TVSAVLMVESEASELPEEVMLGSVMYGHQQMQTAIKLIEELKAEAGKPAWEWTAPEKDDR
LYNAVKEQAFEGIKNAYAISDKMQRQDQLAEIRLAAVEALVSEDGEWSEDEVKGLFGKLE
KELVRGRIIAGEPRIDGRDTKTVRPVFVETTVLPRVHGSALFTRGETQAIVVATLGAERD
AQMIDAVEGEYRDRFMLHYNFPPFCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSAEEF
PYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGIAMGLIKEPDAYAVLTDI
LGDEDHLGDMDFKVAGTEKGVTALQMDIKIEGINEEIMRTALAQARDGRLHILEKMNAVI
STHRQEMSEFAPRIITVKIHADKIRDVIGKGGATIRAITEETGATIDIQDDGTVMIFSSD
YNAGQDALHRIEQITAEVEVGKVYQGRVAKLMDFGAFVTILPGKDGLVHISQISDERVEN
VSDKLSEGDMIEVKVLEVDRQGRIRLSMKAVHETAAE
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
gtgaattcagtaaaaaagacagttcagttcggtgagcatatcctcagcctggaaaccgga
aaaattgcacgtcaggccggtggttccattattgccagtctgggtgaaacatcagttctg
gtaactgtagtgggcaagaaaaatgttaatccaggacaggatttctttccattaaccgtc
aattatcaagaacgtacctatgcggcaggtaaaattccgggtggttttttcaagcgagaa
ggtcgtccctcagagaaagaaaccctgacctcacgactgatcgatcgtccgctgcgtcca
ttgtttcctaaaggttttatcaacgaagttcaggtcattgccacggttatggcattggat
cctgaaatcgatccggatattccggcgatgattggtgcttctgctgctttggctgtctct
ggtattccatttaatggtcccttaggcgcggctcgggtaggttatgttgatggtaactac
cttttgaatccatcaaagaaacaattggccaacagctcattggatttggtcgtagccggt
accgtcagtgcggtattgatggtcgaatcagaggcctccgaattacctgaagaagtgatg
ctaggttctgtcatgtatggtcatcagcaaatgcagacagccataaaattgattgaagaa
ctgaaagctgaagcaggtaaaccagcctgggaatggactgctcctgaaaaagatgatcgt
ttgtacaatgctgtcaaagagcaagcatttgaaggtatcaagaacgcctatgcgattagc
gacaaaatgcagcgccaggatcaattggctgaaattcgtctagccgctgttgaagcctta
gtcagtgaagatggcgaatggtctgaagatgaagtcaaaggtttatttggcaaattggaa
aaagaactggttcgtggccgtattattgccggtgagccacgtatcgatggccgtgatacc
aaaactgtccgtcccgtgtttgttgaaaccactgtattgccacgcgttcatggttctgcc
ttgtttacccgtggtgaaacgcaggcaatcgttgttgcaaccttgggcgctgagcgtgat
gcacagatgattgatgcggtagaaggtgagtaccgtgatcgttttatgctgcattacaat
tttccgccattctgtgtcggtgaaaccggttttgttggttcgccgaagcgccgtgaaatt
ggtcatggcaagttagccaaacgtggtattcaggctgttatgccaagtgctgaagaattc
ccgtatgtggttcgtgtggtatcagaaatcactgaatccaatgggtcgagctccatggct
tctgtatgtggtacgtcattggcattaatggatgccggtgtaccaattaaagcacctgtt
gccggtattgcgatggggctgattaaagaaccggatgcctatgcggtattgactgatatt
ttaggtgacgaagatcacctgggcgatatggactttaaagtagcgggtaccgaaaaaggt
gtgaccgcattgcagatggatatcaagattgaaggcatcaacgaagaaatcatgcgtact
gcactggcgcaagcccgtgatggtcgtctgcatattctggaaaaaatgaatgctgtgatt
tcgactcatcgtcaggaaatgtccgaatttgccccacgcattatcactgtgaaaattcat
gctgataagatccgtgatgtaatcggtaaaggtggtgccaccattcgtgcaattaccgaa
gaaaccggtgcaaccattgatattcaggatgatggcaccgtgatgattttctcgtcggat
tataatgcgggtcaggatgccctgcaccgtatagagcaaatcaccgctgaagtcgaagtt
ggcaaagtttatcagggccgtgttgccaaactgatggatttcggcgcatttgttactatc
ctgccgggtaaagatggtctggtgcatatttcacaaatttcagatgagcgcgtggaaaat
gtcagcgataaattatctgaaggcgatatgattgaagtgaaagttctggaggttgatcgt
cagggccgtattcgtttgagtatgaaagctgttcatgaaacggctgccgaataa
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