Methylophaga pinxianii: LGT42_011955
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Entry
LGT42_011955 CDS
T08312
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
mpin
Methylophaga pinxianii
Brite
KEGG Orthology (KO) [BR:
mpin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mpin03016
]
LGT42_011955 (truB)
Enzymes [BR:
mpin01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
LGT42_011955 (truB)
Transfer RNA biogenesis [BR:
mpin03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LGT42_011955 (truB)
Prokaryotic type
LGT42_011955 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
TxDE
Motif
Other DBs
NCBI-ProteinID:
UPH45217
LinkDB
All DBs
Position
complement(2506213..2507142)
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AA seq
309 aa
AA seq
DB search
MAKRNKKGRDITGIVIVDKPTGMSSNHVLQRVKRLYNANKAGHTGSLDPLATGVLPICLG
EATKLSTYLLDADKQYQVRCQLGILTDSGDSDGAVIAQQDIPEFTAEQLQNILLNFTGEQ
QQIPPMFSALKHQGQPLYKLARQGIEIERKSRLITIYSIELLAYDIDSFTLQVACSKGTY
IRTLVQDIAAELGGYGHVTMLRRTNAAGYTLEQAFSLDDLQHSVEVNGVEALDAQLLPAH
EALPDWPLIKLDSVMSDDMRYGRAVKTDVLGKSAKIRLFDYQDQFIGLGELALDGTVSAK
RLFVTGDAV
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacgcaataaaaaaggtcgtgatattaccggtatcgtgattgtcgataaaccg
accgggatgagttcaaatcatgtcctgcagcgtgtaaagcgtctatacaatgcgaataag
gcgggtcacactggcagtcttgatccactggcaaccggggttttacccatttgtctgggc
gaagccacgaaactttccacttatttactggatgctgacaaacaatatcaagttcgttgt
cagttgggcattctgaccgatagtggcgatagtgacggcgcagtcatcgctcagcaagac
attccggagtttacagctgaacaactgcaaaatattttgctgaactttaccggtgaacag
caacagatccctcccatgttttctgctttgaaacatcagggacagccactttataagttg
gcgcgccaaggaattgaaattgaacgaaaatcccgccttattaccatctatagcattgag
ctattggcttacgatatcgatagttttacgttgcaggttgcctgtagcaaaggtacttat
attcggactttagtacaggatattgcggcggagctgggtggttatggacatgtcaccatg
ctacggcggaccaatgccgccggatatacactggagcaagcgttttcacttgatgatctg
caacattctgttgaagtgaatggggtggaggctcttgatgcccaactattaccagcacat
gaagccttacctgactggccattaatcaaactggattctgtgatgtcggatgatatgcga
tacggtagagcggtcaaaaccgatgtgttgggtaaaagcgcaaaaattcgtttatttgat
tatcaggatcaatttattggtcttggcgaattggcgctggatggcactgtttcagcaaaa
cgtttgtttgttaccggcgatgcggtttaa
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